
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/4431521/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/GBM-TP/4396352/GBM-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=GBM-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=GBM-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/GBM-TP/4396352/GBM-TP.clin.merged.picked.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/4431521/transformed.cor.cli.txt"

nPatients in clinical file=575, in cluster file=561, common to both=553
[1]  80 553
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               75               478 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               75               478 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               82               471 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               82               471 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               32               521 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               32               521 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               30               523 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               30               523 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               52               501 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               52               501 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               58               495 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               58               495 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               34               519 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               34               519 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               32               521 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               32               521 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               45               508 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               45               508 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               38               515 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               38               515 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               22               531 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               22               531 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               21               532 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               21               532 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              447               106 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              447               106 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              451               102 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              451               102 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               47               506 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               47               506 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               53               500 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               53               500 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               45               508 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               45               508 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               70               483 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               70               483 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                541 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                541 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 3                550 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 3                550 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                13                540 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                13                540 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                13                540 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                13                540 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                56                497 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                56                497 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                45                508 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                45                508 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                11                542 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                11                542 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                18                535 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                18                535 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                24                529 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                24                529 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                37                516 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                37                516 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                36                517 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                36                517 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                41                512 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                41                512 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                53                500 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                53                500 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                50                503 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                50                503 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                50                503 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                50                503 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
               208                345 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
               208                345 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               182                371 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               182                371 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               209                344 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               209                344 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               207                346 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               207                346 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                58                495 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                58                495 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                33                520 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                33                520 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               17               536 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               17               536 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               14               539 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               14               539 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               13               540 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               13               540 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               31               522 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               31               522 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               32               521 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               32               521 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               38               515 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               38               515 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               32               521 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               32               521 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               54               499 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               54               499 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               54               499 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               54               499 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               44               509 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               44               509 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               44               509 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               44               509 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               83               470 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               83               470 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              120               433 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              120               433 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                8               545 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                8               545 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                6               547 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                6               547 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               59               494 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               59               494 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               45               508 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               45               508 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              191               362 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              191               362 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               85               468 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               85               468 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               460                 93 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               460                 93 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               472                 81 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               472                 81 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                96                457 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                96                457 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                91                462 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                91                462 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                60                493 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                60                493 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                57                496 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                57                496 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               177                376 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               177                376 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               144                409 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               144                409 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                97                456 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                97                456 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                61                492 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                61                492 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                79                474 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                79                474 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                63                490 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                63                490 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                41                512 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                41                512 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                68                485 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                68                485 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                60                493 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                60                493 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                28                525 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                28                525 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                36                517 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                36                517 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                18                535 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                18                535 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                17                536 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                17                536 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                40                513 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                40                513 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               175                378 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               175                378 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              113               440 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              113               440 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "DCCUPLOADDATE"                         
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "KARNOFSKYPERFORMANCESCORE"             
[10] "HISTOLOGICALTYPE"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "BATCHNUMBER"                           

Input Data has 12 rows and 553 columns.

[1] "Batch" "12"   
[1] "Last Follow UP"
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
         278          144          558          705          322         1077 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
         630         2511          627         1699         2361          612 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
        1614         1300          748          315         2755           86 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
         430          109          326          320          556          208 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
         447           97          458          383          199           76 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
         604          254          291          183          600          804 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
         873          762          167          310          634          828 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
        2729          691            7         1560          268         1757 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
         515          106          821         1977          355          537 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
         704         2817         3040          476         1489          503 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
         514          538          327          440          121          422 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
         432          485          372          300          234          323 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
           5          484          782          133          764          322 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
         377          441          321         1433          345          281 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
         492          102          511          393          465          469 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
         492           NA            8          123         1439            3 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
         108          691          988          320          570          428 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
         701          674          327           NA          280           NA 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
         357           71          611          508          298          238 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
          NA           NA          359          389          263           97 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
         166           NA           NA           78         1729           NA 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
         161          579           95          396            7           67 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
          83         2767           60         1642          578           77 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
        1228         2246          801          866          454          313 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
         556          142          214           79           12          196 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
         166          118          151          360            6          378 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
         684           10          548          314          359           NA 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
         455          313          168            8         2145          142 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
         245            5         1065          375           98          136 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
         293           62          717          285          678          594 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
         163           82           65           28         1322         1405 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
         204          218          699          178          165          637 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
         226          193          109          815          263          239 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
         413         1031           33           23          149          282 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
          86          932          181          207          182          133 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
          13          958          341          107          254          138 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
         268          273          260          204           83          114 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
         186          138          119          236          163           44 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
          15          224          252          391          145           47 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
         145          151          690         1057          119         3310 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
          53          132          419          316          231          103 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
        1636           39          195          458          685          447 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
        1084          593           29          279          330          478 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
          97          322            9           17          106          358 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
         259          561         1770           39          326          146 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
         198          486          526          168          426          438 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
          49          316          181          218         2004            3 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
        1161          790          734          185           80          550 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
          NA          378         1615         1311          167          277 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
         451          434         2790          753          562          323 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
         715          845         1179          271          626         3880 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
         177          189          929          658          364          346 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
         482          277          442          121          103          287 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
         769          414          194         1807         1314          784 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
         351          333          358         1050          357          398 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
          98           61          459          364           29          188 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
         701           68          342          418           99           41 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
         164           88          502          801           62          879 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
         485          587           24           42           34          114 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
         974         1788          703          216           35          917 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
          28         1245          186          378           30           59 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
         540          542          232          179          217          532 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
         242          114          103          300           NA          581 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
        1618          167          119          302          793          496 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
         130          882           25          301          406          111 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
         556          425          195          358          665          262 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
          13          434          103          327          276          181 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
         394          141          772          106          217          385 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
          99            4          294          148           33          229 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
           5          124          501          213          214          202 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
         343          244          567          144          242           54 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
         198          164          161          165          305          422 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
         296          953          216          285          286          452 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
         167          269           37           48          241           70 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
         146          504           NA          555         1008          648 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
         914          427          350          752          316          316 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
         489          231           87          438          479            6 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
          77          279          253          231          257           36 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
          46           86            4           20          205          145 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
         222          160          119          275          473          442 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
         358          298          432          237          415          128 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
         259          319          165          467          641           15 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
           3          482          593           36          142          386 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
         451          515          372          632          456          485 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
         223          269          693          644          643          112 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
         383          603          330          323           26          406 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
         272          290           30          135           NA            6 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
         351          235          105          635          131          436 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
         250          227          145          138           94          111 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
         278           77          328          507          100           82 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
         346          519          253          637          147          153 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
           7          281          234          236           49          538 
TCGA-87-5896 
           2 
Variable 1:'AGE':	nDistinctValues=72,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=361,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=402,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=23,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'BATCH.NUMBER':	nDistinctValues=21,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "HISTOLOGICAL.TYPE"                     
[5] "RADIATIONS.RADIATION.REGIMENINDICATION"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 553 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=72, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    12  63
  1P GAIN WILD-TYPE  96 382
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               75               478 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               63               382 
$`1P GAIN MUTATED`
TCGA-02-0001 TCGA-02-0052 TCGA-02-0055 TCGA-02-0106 TCGA-02-0113 TCGA-02-0266 
        9.14        12.59         2.50        11.67        92.61        17.69 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0451 TCGA-02-0456 TCGA-02-2483 TCGA-06-0128 
       15.91        25.71        16.18         3.35        15.29        22.72 
TCGA-06-0133 TCGA-06-0152 TCGA-06-0168 TCGA-06-0177 TCGA-06-0182 TCGA-06-0188 
       14.07        11.80        19.04         1.97         2.53        28.47 
TCGA-06-0192 TCGA-06-0195 TCGA-06-0206 TCGA-06-0209 TCGA-06-0216 TCGA-06-0237 
       18.28         7.04         6.44         3.88        22.49        10.32 
TCGA-06-0410 TCGA-06-0645 TCGA-06-0649 TCGA-06-1084 TCGA-06-1087 TCGA-06-2557 
        4.67         3.22         2.04         7.43         3.58         1.08 
TCGA-06-5856 TCGA-06-6698 TCGA-08-0349 TCGA-08-0350 TCGA-08-0386 TCGA-08-0531 
        3.75         4.77         7.59         3.39        15.72         5.52 
TCGA-12-0619 TCGA-12-0662 TCGA-12-0773 TCGA-12-0826 TCGA-12-1090 TCGA-12-1098 
       10.39        38.17        43.10        27.78         6.21         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-3653 TCGA-14-0783 TCGA-14-0813 TCGA-14-0817 
        3.39         9.44        11.74         6.18         1.35         5.39 
TCGA-14-0867 TCGA-14-1034 TCGA-14-1452 TCGA-14-1454 TCGA-14-1794 TCGA-14-1823 
        2.04        15.95         7.10        30.15         0.99        17.82 
TCGA-14-1827 TCGA-14-3477 TCGA-15-0742 TCGA-15-1447 TCGA-15-1449 TCGA-19-0962 
        5.88         3.75         9.86        53.19         5.49         0.43 
TCGA-19-1786 TCGA-19-1787 TCGA-19-2625 TCGA-19-4065 TCGA-26-1440 TCGA-26-6173 
        7.13        12.66         4.08         7.04         9.73         7.92 
TCGA-28-2509 TCGA-28-5207 TCGA-28-5216 TCGA-32-1970 TCGA-32-1987 TCGA-32-4210 
        4.77         9.04        13.64        15.35        14.83         3.68 
TCGA-32-5222 TCGA-74-6584 TCGA-76-4934 
       10.62         7.46         2.53 

$`1P GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
        3.19        15.06         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.29         8.81        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       65.00        17.65        23.15        99.95        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.54        16.90        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
        0.16         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-2466 TCGA-02-2470 
       10.55        47.11        11.34         9.24        16.80        12.92 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 
        0.10         3.55        32.48        10.52        18.74        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       46.59        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0169 
       11.80         2.56        56.84        10.65         5.29         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 
       13.02         0.23         2.20         2.73        90.97        53.98 
TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 
       19.00        40.37        73.84        26.33        14.93        10.29 
TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        4.67         2.60         0.39         5.46         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 
        0.20        12.43         0.33        18.02        11.80        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 
       14.96        10.29         5.52         0.26        70.52         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 
        0.16        35.01        12.33         4.47         9.63        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 
        5.85         5.42        20.94         6.35        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
        7.86        13.58        33.90         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83        30.64         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43        31.50        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 
        8.81         8.98         8.55         6.71         2.73         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        7.36         8.28        12.85         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
       13.78        10.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       10.85         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       11.77         8.52        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-12-0615 TCGA-12-0616 
        4.80         6.51        15.98        17.29        14.01        14.40 
TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 
        1.61         5.95         7.17        65.88         0.10        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       53.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 
       24.76        18.48        10.62        23.51        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
       20.58       127.56         5.82        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1599 TCGA-12-1600 
       11.38        15.85         9.11        14.53        25.28        13.61 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.38        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       11.77        34.52        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 TCGA-14-1037 
        3.25         2.89        16.50        26.33        28.90        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
       23.11         1.15         0.92        40.93         6.12        12.43 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
        1.94        17.75         7.63         7.13        17.49         7.96 
TCGA-14-4157 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
        3.39        50.53        19.10         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        8.61        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1789 TCGA-19-1791 
       12.95         4.64        25.38         3.48         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 
        9.67         4.87         1.08         7.53         0.16        16.47 
TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03        13.87        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6174 
       14.86         5.49         8.84         1.22         1.58         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 
        1.51         2.83         0.13         0.66         6.74         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        5.26         3.91        15.55        14.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       14.20         7.79         4.21         8.52        10.49         5.42 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84        22.78        21.17        21.14 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       12.59        19.82        10.85         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 
        4.77         4.54         3.09         3.65         9.14        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.43              0.07 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            92.61            127.56 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             7.59             10.39 
[1] "0.4 - 92.6 (7.6)"   "0.1 - 127.6 (10.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-87-5896 
"1P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-87-5896 
"1P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-87-5896 
"1P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D1V2, continuous
D1V3, binary
                   cls
clus                  0   1
  1P GAIN MUTATED    33  42
  1P GAIN WILD-TYPE 185 293
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     33   42
  1P GAIN WILD-TYPE  185  293
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE              33               185
  MALE                42               293
D1V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  1P GAIN MUTATED                               0                   1
  1P GAIN WILD-TYPE                            10                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  1P GAIN MUTATED                                74
  1P GAIN WILD-TYPE                             451
D1V5, multiclass
                                 clus
vv                                1P GAIN MUTATED 1P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              74               451
D1V6, binary
                   cls
clus                  0   1
  1P GAIN MUTATED    54  21
  1P GAIN WILD-TYPE 328 150
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     54   21
  1P GAIN WILD-TYPE  328  150
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO               54               328
  YES              21               150

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED    14  68
  1Q GAIN WILD-TYPE  94 377
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               82               471 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               68               377 
$`1Q GAIN MUTATED`
TCGA-02-0001 TCGA-02-0024 TCGA-02-0052 TCGA-02-0055 TCGA-02-0106 TCGA-02-0113 
        9.14        53.06        12.59         2.50        11.67        92.61 
TCGA-02-0266 TCGA-02-0330 TCGA-02-0451 TCGA-02-0456 TCGA-02-2483 TCGA-06-0128 
       17.69        15.91        16.18         3.35        15.29        22.72 
TCGA-06-0133 TCGA-06-0152 TCGA-06-0168 TCGA-06-0177 TCGA-06-0182 TCGA-06-0188 
       14.07        11.80        19.04         1.97         2.53        28.47 
TCGA-06-0192 TCGA-06-0195 TCGA-06-0206 TCGA-06-0209 TCGA-06-0216 TCGA-06-0237 
       18.28         7.04         6.44         3.88        22.49        10.32 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0645 TCGA-06-0649 TCGA-06-1084 TCGA-06-1087 
       70.52         4.67         3.22         2.04         7.43         3.58 
TCGA-06-2557 TCGA-06-2569 TCGA-06-5856 TCGA-06-6698 TCGA-08-0349 TCGA-08-0350 
        1.08         0.43         3.75         4.77         7.59         3.39 
TCGA-08-0386 TCGA-08-0524 TCGA-08-0531 TCGA-12-0619 TCGA-12-0662 TCGA-12-0773 
       15.72         6.51         5.52        10.39        38.17        43.10 
TCGA-12-0826 TCGA-12-0827 TCGA-12-1090 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       27.78        38.76         6.21         3.98         3.39         9.44 
TCGA-12-3653 TCGA-14-0783 TCGA-14-0813 TCGA-14-0817 TCGA-14-0865 TCGA-14-0867 
       11.74         6.18         1.35         5.39        16.50         2.04 
TCGA-14-0871 TCGA-14-1452 TCGA-14-1454 TCGA-14-1794 TCGA-14-1823 TCGA-14-3477 
       28.90         7.10        30.15         0.99        17.82         3.75 
TCGA-15-0742 TCGA-15-1447 TCGA-15-1449 TCGA-19-0962 TCGA-19-1786 TCGA-19-1791 
        9.86        53.19         5.49         0.43         7.13         0.13 
TCGA-19-2625 TCGA-19-4065 TCGA-26-1440 TCGA-26-6173 TCGA-28-2509 TCGA-28-5207 
        4.08         7.04         9.73         7.92         4.77         9.04 
TCGA-28-5216 TCGA-28-5218 TCGA-32-1970 TCGA-32-1987 TCGA-32-2632 TCGA-32-4210 
       13.64         4.21        15.35        14.83         8.84         3.68 
TCGA-32-5222 TCGA-41-5651 TCGA-74-6584 TCGA-76-4934 
       10.62        11.54         7.46         2.53 

$`1Q GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.55        20.61        55.86        77.62        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
       15.06         6.54        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       17.65        23.15        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       16.90        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-2466 TCGA-02-2470 
       10.55        47.11        11.34         9.24        16.80        12.92 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 
        0.10         3.55        32.48        10.52        18.74        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       46.59        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0169 
       11.80         2.56        56.84        10.65         5.29         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 
       13.02         0.23         2.20         2.73        90.97        53.98 
TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 
       19.00        40.37        73.84        26.33        14.93        10.29 
TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        4.67         2.60         0.39         5.46         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 
        0.20        12.43         0.33        18.02        11.80        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 
       14.96        10.29         5.52         0.26         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 
       35.01        12.33         4.47         9.63        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        5.42        20.94         6.35        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.58        33.90         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
       30.64         5.95         6.81         5.98         4.37        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         6.71         2.73         6.12         4.54         3.91 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.76         5.36         1.45         0.49         7.36         8.28 
TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
       12.85         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 
       35.64        19.50         0.95         9.17        10.85         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 
       18.44        58.19         1.28        10.72         4.80        15.98 
TCGA-08-0529 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 
       17.29        14.01        14.40         1.61         5.95         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
       65.88         0.10        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 
       18.08        28.37        12.43        53.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 
       23.51         8.91        20.58       127.56         5.82        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 
       11.54        10.95        11.77        34.52        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        2.01        15.09        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 
       11.24        13.74         3.25         2.89        26.33        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       58.78        23.11         1.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
       12.43         1.94        17.75         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 
       17.49         7.96         3.39        50.53        19.10         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       11.77        21.86         8.61        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        9.07         5.95        12.95         4.64        25.38         3.48 
TCGA-19-1787 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
       12.66         3.25         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        0.16        16.47         7.00         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1442 TCGA-26-1443 
        5.29         5.42        10.03        13.87        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        1.58         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 
        6.74         7.30         5.26         3.91        15.55        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5219 TCGA-28-5220 
       11.77         9.80        14.20         7.79         8.52        10.49 
TCGA-28-6450 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        5.42        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       14.99        15.95         7.33        22.78        21.17        21.14 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       12.59        19.82        10.85         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 
        9.53         0.99         4.44        11.84         0.20         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 
        3.45        20.88         4.31        14.33         8.22         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         3.65         9.14        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.32        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.13              0.07 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            92.61            127.56 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            7.755            10.390 
[1] "0.1 - 92.6 (7.8)"   "0.1 - 127.6 (10.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"1Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"1Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"1Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D2V2, continuous
D2V3, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED    37  45
  1Q GAIN WILD-TYPE 181 290
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     37   45
  1Q GAIN WILD-TYPE  181  290
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              37               181
  MALE                45               290
D2V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  1Q GAIN MUTATED                               0                   2
  1Q GAIN WILD-TYPE                            10                  16
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  1Q GAIN MUTATED                                80
  1Q GAIN WILD-TYPE                             445
D2V5, multiclass
                                 clus
vv                                1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           2                16
  UNTREATED PRIMARY (DE NOVO) GBM              80               445
D2V6, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED    59  23
  1Q GAIN WILD-TYPE 323 148
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     59   23
  1Q GAIN WILD-TYPE  323  148
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO               59               323
  YES              23               148

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED     5  27
  2P GAIN WILD-TYPE 103 418
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               32               521 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               27               418 
$`2P GAIN MUTATED`
TCGA-02-0001 TCGA-02-0106 TCGA-02-0113 TCGA-02-0281 TCGA-06-0133 TCGA-06-0151 
        9.14        11.67        92.61         3.98        14.07        46.59 
TCGA-06-0192 TCGA-06-0216 TCGA-06-0649 TCGA-06-0877 TCGA-06-1086 TCGA-06-2569 
       18.28        22.49         2.04         5.65         6.35         0.43 
TCGA-06-6391 TCGA-08-0346 TCGA-08-0510 TCGA-08-0517 TCGA-08-0524 TCGA-12-0778 
        1.45         4.34         3.48        58.19         6.51        14.83 
TCGA-12-1099 TCGA-14-0817 TCGA-14-0871 TCGA-14-1453 TCGA-14-1823 TCGA-14-3477 
        3.39         5.39        28.90         1.15        17.82         3.75 
TCGA-16-0846 TCGA-19-0957 TCGA-19-1786 TCGA-19-2629 TCGA-27-1834 TCGA-28-5218 
        3.91        21.86         7.13        16.47        33.14         4.21 
TCGA-32-4210 TCGA-74-6584 
        3.68         7.46 

$`2P GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 
        3.48        26.99        65.00        17.65        23.15        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
       14.47        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.69        10.62         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       18.74        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        7.82        19.46        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.29        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.73        90.97         1.97        53.98        19.00         2.53 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       40.37        73.84        26.33        28.47        14.93        10.29 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 
        3.88         4.96        11.84         0.20        12.43         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       18.02        10.32        11.80        20.42        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 
       35.01        12.33         3.22         4.47         9.63        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92        43.46        46.19         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
        5.42        20.94         7.43         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58        33.90         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        4.37        31.50        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 
        6.12         4.54         3.91         7.76         5.36         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.96        22.68        34.75         3.91       108.82         1.74 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 
        0.30         0.56        11.77         8.52        18.44         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
       10.72         4.80        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.40         1.61        10.39         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
        9.11        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 
       15.85         9.11        14.53         3.98         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       13.61         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.01        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 
        2.24        11.24        13.74         3.25         1.35         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       16.50        26.33         2.04        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        7.10        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.94        17.75         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       17.49         7.96         3.39         9.86        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
       53.19         5.49         9.93        26.07        16.31         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
       13.97         6.41        11.77         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
       25.38         3.48        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 
        4.87         1.08         7.53         0.16         4.08         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
        7.33         8.84        22.78        21.17        21.14        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.82        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.43              0.07 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            92.61            127.56 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             6.82             10.29 
[1] "0.4 - 92.6 (6.8)"   "0.1 - 127.6 (10.3)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-87-5896 
"2P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-87-5896 
"2P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-87-5896 
"2P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D3V2, continuous
D3V3, binary
                   cls
clus                  0   1
  2P GAIN MUTATED    18  14
  2P GAIN WILD-TYPE 200 321
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     18   14
  2P GAIN WILD-TYPE  200  321
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE              18               200
  MALE                14               321
D3V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  2P GAIN MUTATED                               1                   1
  2P GAIN WILD-TYPE                             9                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  2P GAIN MUTATED                                30
  2P GAIN WILD-TYPE                             495
D3V5, multiclass
                                 clus
vv                                2P GAIN MUTATED 2P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 1                 9
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              30               495
D3V6, binary
                   cls
clus                  0   1
  2P GAIN MUTATED    21  11
  2P GAIN WILD-TYPE 361 160
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     21   11
  2P GAIN WILD-TYPE  361  160
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO               21               361
  YES              11               160

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED     5  25
  2Q GAIN WILD-TYPE 103 420
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               30               523 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               25               420 
$`2Q GAIN MUTATED`
TCGA-02-0001 TCGA-02-0106 TCGA-02-0113 TCGA-02-0281 TCGA-06-0128 TCGA-06-0133 
        9.14        11.67        92.61         3.98        22.72        14.07 
TCGA-06-0151 TCGA-06-0192 TCGA-06-0216 TCGA-06-0649 TCGA-06-0877 TCGA-06-1086 
       46.59        18.28        22.49         2.04         5.65         6.35 
TCGA-06-2569 TCGA-08-0346 TCGA-08-0510 TCGA-08-0524 TCGA-12-0778 TCGA-14-0740 
        0.43         4.34         3.48         6.51        14.83        11.97 
TCGA-14-0817 TCGA-14-0871 TCGA-14-1453 TCGA-14-1823 TCGA-14-3477 TCGA-16-0846 
        5.39        28.90         1.15        17.82         3.75         3.91 
TCGA-19-0957 TCGA-19-1786 TCGA-27-1834 TCGA-28-5218 TCGA-32-4210 TCGA-74-6584 
       21.86         7.13        33.14         4.21         3.68         7.46 

$`2Q GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 
        3.48        26.99        65.00        17.65        23.15        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
       14.47        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.69        10.62         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
       47.31         0.10         3.55        32.48        10.52        18.74 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       90.97         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 
       73.84        26.33        28.47        14.93        10.29         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 
        4.96        11.84         0.20        12.43         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       10.32        11.80        20.42        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        0.26        70.52         4.67         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 
       12.33         3.22         4.47         9.63        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       43.46        46.19         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       20.94         7.43         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58        33.90         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83        30.64         5.95         6.81         5.98         4.37 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.96        22.68        34.75         3.91       108.82         1.74 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.30         0.56        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
        1.28        10.72         4.80        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       14.01        14.40         1.61        10.39         5.95         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        5.49         9.11        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        9.44        25.28        13.61         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 
       13.08         3.22         2.01        15.09         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 
        2.89        16.50        26.33         2.04        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       23.11         7.10        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.94        17.75         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.13        17.49         7.96         3.39         9.86        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       19.10        53.19         5.49         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0960 TCGA-19-0962 
       18.28        13.97         6.41        11.77         8.61         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       14.27         3.39        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
        4.64        25.38         3.48        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
        9.86        18.25        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.66         6.74         4.77         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55        14.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
        7.79        13.64         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       14.99        15.95         7.33         8.84        22.78        21.17 
TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
       21.14        12.59        19.82        10.85        10.62         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        20.88         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
       14.33         8.22         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.43              0.07 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            92.61            127.56 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            7.295            10.190 
[1] "0.4 - 92.6 (7.3)"   "0.1 - 127.6 (10.2)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"2Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"2Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"2Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D4V2, continuous
D4V3, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED    15  15
  2Q GAIN WILD-TYPE 203 320
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     15   15
  2Q GAIN WILD-TYPE  203  320
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE              15               203
  MALE                15               320
D4V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  2Q GAIN MUTATED                               1                   1
  2Q GAIN WILD-TYPE                             9                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  2Q GAIN MUTATED                                28
  2Q GAIN WILD-TYPE                             497
D4V5, multiclass
                                 clus
vv                                2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 1                 9
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              28               497
D4V6, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED    21   9
  2Q GAIN WILD-TYPE 361 162
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     21    9
  2Q GAIN WILD-TYPE  361  162
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO               21               361
  YES               9               162

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED    10  42
  3P GAIN WILD-TYPE  98 403
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               52               501 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               42               403 
$`3P GAIN MUTATED`
TCGA-02-0001 TCGA-02-0028 TCGA-02-0069 TCGA-02-0074 TCGA-02-0281 TCGA-02-0324 
        9.14        90.58        28.70        10.19         3.98         7.69 
TCGA-02-0325 TCGA-02-0332 TCGA-06-0166 TCGA-06-0188 TCGA-06-0192 TCGA-06-0211 
       10.62        25.71         5.29        28.47        18.28        11.84 
TCGA-06-0237 TCGA-06-0410 TCGA-06-0413 TCGA-06-0648 TCGA-06-0649 TCGA-06-0686 
       10.32         4.67         0.16         9.63         2.04         9.37 
TCGA-06-0743 TCGA-06-1087 TCGA-08-0345 TCGA-08-0346 TCGA-08-0510 TCGA-12-0615 
       22.29         3.58         1.74         4.34         3.48        14.01 
TCGA-12-0619 TCGA-12-0822 TCGA-12-0829 TCGA-12-1088 TCGA-12-1099 TCGA-12-1598 
       10.39        23.51        20.58       127.56         3.39         9.44 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-14-1794 TCGA-14-1825 TCGA-19-4065 
        6.38        59.41        43.20         0.99         7.63         7.04 
TCGA-26-1440 TCGA-26-6174 TCGA-27-1834 TCGA-27-2521 TCGA-28-2506 TCGA-28-2509 
        9.73         2.30        33.14        10.39         6.74         4.77 
TCGA-28-5207 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-6450 TCGA-32-2632 
        9.04         7.79        13.64         8.52         5.42         8.84 
TCGA-41-3915 TCGA-41-4097 TCGA-76-4934 TCGA-76-6285 
       11.84         0.20         2.53         8.32 

$`3P GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        24.59        10.36         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.06        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        9.57         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       11.67        17.65        23.15        92.61        99.95        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.90        17.69        10.75        14.47 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0326 
       13.87        14.20        15.95        12.23         9.86         0.16 
TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       15.91         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 
       11.80         2.56        56.84        10.65        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        90.97         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       14.93        10.29         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 
        6.44         5.46         3.88         4.96         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       22.49         0.33        18.02        11.80        20.42        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0414 
       10.29         5.52         0.26        70.52         8.05        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0650 TCGA-06-0744 TCGA-06-0745 
       12.33         3.22         4.47        23.57        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.14         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        6.35        26.79         8.65         7.86        13.58        33.90 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0347 TCGA-08-0348 
       22.68        34.75         3.91       108.82        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       11.77         8.52        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 
        4.80         6.51        15.98        17.29         5.52        14.40 
TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
        1.61         5.95         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0826 
       14.27        91.73        24.76        18.48        10.62        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       38.76         8.91         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       25.28        13.61        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.52        11.74        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.74         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1827 TCGA-14-1829 
       12.43         1.94        17.75        17.82         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
       17.49         7.96         3.75         3.39         9.86        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        5.95        12.95         4.64        25.38         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 
        7.53         0.16         4.08        16.47         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-27-1830 TCGA-27-1831 
        8.84         1.22         1.58         7.92         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
        9.86        18.25        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       24.72        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        7.30         5.26         3.91        15.55        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5218 TCGA-28-5220 TCGA-32-1970 TCGA-32-1973 
        9.80        14.20         4.21        10.49        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
       15.95         7.33        22.78        21.17        21.14         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.82        10.85        10.62         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 
        8.94         9.53         0.99         4.44        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.88         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 
        4.77         4.54         3.09         3.65         9.14        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6286 
       16.67         3.29         2.70        11.38        17.06        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.16              0.07 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           127.56            108.82 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             9.09             10.39 
[1] "0.2 - 127.6 (9.1)"  "0.1 - 108.8 (10.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-87-5896 
"3P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-87-5896 
"3P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-87-5896 
"3P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D5V2, continuous
D5V3, binary
                   cls
clus                  0   1
  3P GAIN MUTATED    25  27
  3P GAIN WILD-TYPE 193 308
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     25   27
  3P GAIN WILD-TYPE  193  308
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE              25               193
  MALE                27               308
D5V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  3P GAIN MUTATED                               0                   1
  3P GAIN WILD-TYPE                            10                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  3P GAIN MUTATED                                51
  3P GAIN WILD-TYPE                             474
D5V5, multiclass
                                 clus
vv                                3P GAIN MUTATED 3P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              51               474
D5V6, binary
                   cls
clus                  0   1
  3P GAIN MUTATED    36  16
  3P GAIN WILD-TYPE 346 155
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     36   16
  3P GAIN WILD-TYPE  346  155
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO               36               346
  YES              16               155

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED    13  45
  3Q GAIN WILD-TYPE  95 400
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               58               495 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               45               400 
$`3Q GAIN MUTATED`
TCGA-02-0001 TCGA-02-0028 TCGA-02-0047 TCGA-02-0069 TCGA-02-0074 TCGA-02-0106 
        9.14        90.58        14.70        28.70        10.19        11.67 
TCGA-02-0281 TCGA-02-0324 TCGA-02-0325 TCGA-02-0332 TCGA-06-0166 TCGA-06-0188 
        3.98         7.69        10.62        25.71         5.29        28.47 
TCGA-06-0192 TCGA-06-0211 TCGA-06-0237 TCGA-06-0410 TCGA-06-0413 TCGA-06-0648 
       18.28        11.84        10.32         4.67         0.16         9.63 
TCGA-06-0649 TCGA-06-0686 TCGA-06-0743 TCGA-06-1087 TCGA-06-5416 TCGA-08-0345 
        2.04         9.37        22.29         3.58         6.71         1.74 
TCGA-08-0346 TCGA-08-0510 TCGA-12-0615 TCGA-12-0619 TCGA-12-0827 TCGA-12-0829 
        4.34         3.48        14.01        10.39        38.76        20.58 
TCGA-12-1088 TCGA-12-1598 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-14-1794 
      127.56         9.44         6.38        59.41        43.20         0.99 
TCGA-14-1825 TCGA-14-1829 TCGA-14-3477 TCGA-19-4065 TCGA-26-1440 TCGA-26-6174 
        7.63         7.13         3.75         7.04         9.73         2.30 
TCGA-27-1831 TCGA-27-1834 TCGA-27-2521 TCGA-28-2506 TCGA-28-2509 TCGA-28-5207 
       16.57        33.14        10.39         6.74         4.77         9.04 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-6450 TCGA-32-1991 TCGA-32-2632 
        7.79        13.64         8.52         5.42        16.93         8.84 
TCGA-41-3915 TCGA-41-4097 TCGA-76-4934 TCGA-76-6285 
       11.84         0.20         2.53         8.32 

$`3Q GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        24.59        10.36         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0048 TCGA-02-0051 
       10.72        10.52        18.28         6.84         3.19        15.06 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       12.59         6.54         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 
        6.02        19.73        26.43        25.05         5.49        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       27.22        89.72        22.72         0.23        51.29         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 
       57.76        16.93         3.48        26.99        65.00        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 
       16.90        17.69        10.75        14.47        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 
       15.95        12.23         9.86         0.16        15.91         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.80         7.82        19.46        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
        8.65         3.19         5.46         9.44        11.80         2.56 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       56.84        10.65        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        90.97         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 
        2.53        40.37        73.84        26.33        14.93        10.29 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        3.88         4.96         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       18.02        11.80        20.42        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        0.26        70.52         8.05        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0650 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        4.47        23.57        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
        5.85         5.42        20.94         7.43         6.35        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58        33.90         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83        30.64         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43        31.50        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 
        8.35         4.54         8.81         8.98         8.55         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.12         4.54         3.91         7.76         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.45         0.49         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        1.55         4.77         4.96        22.68        34.75         3.91 
TCGA-08-0344 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
      108.82        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
       10.59         0.30         0.56        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 
       17.29         5.52        14.40         1.61         5.95         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-1089 
       18.48        10.62        23.51        27.78         8.91         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         3.98         3.39        25.28        13.61 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.18        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        1.35         5.39         2.89        16.50        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.90        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 
       30.15         0.92        40.93         6.12        12.43         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1827 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
       17.75        17.82         5.88        17.49         7.96         3.39 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
        9.86        50.53        19.10        53.19         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03        13.87        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-27-1830 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        4.80         9.86        18.25        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.72        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 
        0.66         7.30         5.26         3.91        15.55        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5218 TCGA-28-5220 TCGA-32-1970 
       11.77         9.80        14.20         4.21        10.49        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        14.83        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
       15.95         7.33        22.78        21.17        21.14         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.82        10.85        10.62         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 
        8.94         9.53         0.99         4.44        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.88         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 
        4.77         4.54         3.09         3.65         9.14        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6286 
       16.67         3.29         2.70        11.38        17.06        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.16              0.07 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           127.56            108.82 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            9.255            10.360 
[1] "0.2 - 127.6 (9.3)"  "0.1 - 108.8 (10.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"3Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"3Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"3Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D6V2, continuous
D6V3, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED    27  31
  3Q GAIN WILD-TYPE 191 304
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     27   31
  3Q GAIN WILD-TYPE  191  304
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              27               191
  MALE                31               304
D6V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  3Q GAIN MUTATED                               0                   1
  3Q GAIN WILD-TYPE                            10                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  3Q GAIN MUTATED                                57
  3Q GAIN WILD-TYPE                             468
D6V5, multiclass
                                 clus
vv                                3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              57               468
D6V6, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED    42  16
  3Q GAIN WILD-TYPE 340 155
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     42   16
  3Q GAIN WILD-TYPE  340  155
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO               42               340
  YES              16               155

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED     6  28
  4P GAIN WILD-TYPE 102 417
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               34               519 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               28               417 
$`4P GAIN MUTATED`
TCGA-02-0011 TCGA-02-0055 TCGA-02-0069 TCGA-02-0074 TCGA-02-0075 TCGA-02-0113 
       20.71         2.50        28.70        10.19        20.84        92.61 
TCGA-06-0130 TCGA-06-0174 TCGA-06-0192 TCGA-06-0195 TCGA-06-0409 TCGA-06-0879 
       10.52         2.20        18.28         7.04        70.52        22.98 
TCGA-06-5856 TCGA-06-6697 TCGA-08-0245 TCGA-08-0246 TCGA-08-0510 TCGA-08-0514 
        3.75        12.85        34.75         3.91         3.48         8.52 
TCGA-08-0516 TCGA-08-0531 TCGA-12-0616 TCGA-12-0691 TCGA-12-0826 TCGA-14-1453 
       18.44         5.52        14.40         6.08        27.78         1.15 
TCGA-14-1821 TCGA-14-3477 TCGA-16-0846 TCGA-26-1439 TCGA-27-2521 TCGA-28-2506 
       17.75         3.75         3.91        13.87        10.39         6.74 
TCGA-28-5215 TCGA-32-1991 TCGA-32-4210 TCGA-41-3915 
        7.79        16.93         3.68        11.84 

$`4P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 
        3.19        15.06        12.59         6.54        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        9.57         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       27.22        89.72        22.72         0.23        51.29         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 
       57.76        16.93         3.48        26.99        65.00        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       17.65        23.15        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        0.16        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.18         3.35        16.80        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       16.18         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        3.55        22.72        32.48        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 
       19.04         3.12        13.02         0.23         2.73        90.97 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0197 
       26.33        28.47        14.93        10.29         4.67         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
        0.20        12.43        22.49         0.33        18.02        10.32 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       11.80        20.42        14.96        10.29         5.52         0.26 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.67         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.19         5.65         7.17         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        7.43         6.35         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58        33.90         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83        30.64         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43        31.50        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 
        8.81         8.98         8.55         6.71         2.73         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        7.36         8.28         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
       22.68       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0512 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       11.77        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-12-0615 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
       15.98        17.29        14.01         1.61        10.39         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       18.48        10.62        23.51        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        9.44        25.28        13.61         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.18        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        1.35         5.39         2.89        16.50        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.90        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 
        3.75        32.02        58.78        23.11         7.10        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.39         9.86        50.53        19.10        53.19         5.49 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
        5.42        10.03         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 
        1.18         1.51         2.83         0.13         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       11.77         9.80        14.20        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.83 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       12.23        20.78        14.99        15.95         7.33         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       22.78        21.17        21.14        12.59        19.82        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.62         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        4.44         0.20        11.54         7.73         3.45        20.88 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.31        14.33         8.22         7.46         4.77         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.14         2.53        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.32        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             1.15              0.07 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            92.61            127.56 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           10.455             9.860 
[1] "1.1 - 92.6 (10.5)" "0.1 - 127.6 (9.9)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-87-5896 
"4P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-87-5896 
"4P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-87-5896 
"4P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D7V2, continuous
D7V3, binary
                   cls
clus                  0   1
  4P GAIN MUTATED    13  21
  4P GAIN WILD-TYPE 205 314
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED     13   21
  4P GAIN WILD-TYPE  205  314
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE              13               205
  MALE                21               314
D7V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  4P GAIN MUTATED                               0                   1
  4P GAIN WILD-TYPE                            10                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  4P GAIN MUTATED                                33
  4P GAIN WILD-TYPE                             492
D7V5, multiclass
                                 clus
vv                                4P GAIN MUTATED 4P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              33               492
D7V6, binary
                   cls
clus                  0   1
  4P GAIN MUTATED    27   7
  4P GAIN WILD-TYPE 355 164
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED     27    7
  4P GAIN WILD-TYPE  355  164
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO               27               355
  YES               7               164

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     8  24
  4Q GAIN WILD-TYPE 100 421
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               32               521 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               24               421 
$`4Q GAIN MUTATED`
TCGA-02-0055 TCGA-02-0069 TCGA-02-0074 TCGA-02-0075 TCGA-02-0113 TCGA-06-0130 
        2.50        28.70        10.19        20.84        92.61        10.52 
TCGA-06-0174 TCGA-06-0192 TCGA-06-0195 TCGA-06-0409 TCGA-06-0879 TCGA-06-5856 
        2.20        18.28         7.04        70.52        22.98         3.75 
TCGA-06-6697 TCGA-08-0245 TCGA-08-0246 TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 
       12.85        34.75         3.91         3.48         8.52        18.44 
TCGA-08-0531 TCGA-12-0616 TCGA-12-0826 TCGA-14-1821 TCGA-14-3477 TCGA-16-0846 
        5.52        14.40        27.78        17.75         3.75         3.91 
TCGA-19-0960 TCGA-19-5956 TCGA-26-1439 TCGA-27-2521 TCGA-28-2506 TCGA-28-5215 
        8.61         6.51        13.87        10.39         6.74         7.79 
TCGA-32-1991 TCGA-32-4210 
       16.93         3.68 

$`4Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 
       14.70         3.19        15.06        12.59         6.54        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
        5.49        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       11.67        17.65        23.15        99.95        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.90        17.69        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         0.16        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.24        16.18         3.35        16.80        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 
        0.10         3.55        22.72        32.48        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 
        5.29        19.04         3.12        13.02         0.23         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       90.97         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 
       73.84        26.33        28.47        14.93        10.29         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.20        12.43        22.49         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       10.32        11.80        20.42        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
        0.26         4.67         8.05         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 
       43.46        46.19         5.65         7.17         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.94         7.43         6.35         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58        33.90         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        0.49         7.36         8.28         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
        4.96        22.68       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        0.56        11.77        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-12-0615 TCGA-12-0618 TCGA-12-0619 
        6.51        15.98        17.29        14.01         1.61        10.39 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
        5.95         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.10        43.10         5.49         9.11        14.83        14.27 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 
       91.73        24.76        18.48        10.62        23.51        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        3.98         3.39         9.44        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.52        11.74        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.74         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.94        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.13        17.49         7.96         3.39         9.86        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       19.10        53.19         5.49         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
       18.28        13.97         6.41        11.77        21.86         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       14.27         3.39        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        4.64        25.38         3.48         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        16.47         7.00         7.04         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.64         4.73         7.96         1.78         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.29         5.42        10.03         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       18.25        33.14        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       24.72        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 
       14.53        11.77         9.80        14.20        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       14.83        12.23        20.78        14.99        15.95         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 
        8.84        22.78        21.17        21.14        12.59        19.82 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        10.62         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.88         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             2.20              0.07 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            92.61            127.56 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            10.29              9.90 
[1] "2.2 - 92.6 (10.3)" "0.1 - 127.6 (9.9)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
  "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"4Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
  "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"4Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
  "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"4Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D8V2, continuous
D8V3, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED    14  18
  4Q GAIN WILD-TYPE 204 317
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED     14   18
  4Q GAIN WILD-TYPE  204  317
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE              14               204
  MALE                18               317
D8V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  4Q GAIN MUTATED                               0                   1
  4Q GAIN WILD-TYPE                            10                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  4Q GAIN MUTATED                                31
  4Q GAIN WILD-TYPE                             494
D8V5, multiclass
                                 clus
vv                                4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              31               494
D8V6, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED    27   5
  4Q GAIN WILD-TYPE 355 166
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED     27    5
  4Q GAIN WILD-TYPE  355  166
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO               27               355
  YES               5               166

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED     6  39
  5P GAIN WILD-TYPE 102 406
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               45               508 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               39               406 
$`5P GAIN MUTATED`
TCGA-02-0024 TCGA-02-0028 TCGA-02-0051 TCGA-02-0054 TCGA-02-0075 TCGA-02-0086 
       53.06        90.58        15.06         6.54        20.84         8.81 
TCGA-02-0106 TCGA-02-0113 TCGA-02-0324 TCGA-02-0456 TCGA-06-0151 TCGA-06-0195 
       11.67        92.61         7.69         3.35        46.59         7.04 
TCGA-06-0209 TCGA-06-0397 TCGA-06-0409 TCGA-06-0410 TCGA-06-0645 TCGA-06-0649 
        3.88         5.52        70.52         4.67         3.22         2.04 
TCGA-06-5856 TCGA-08-0350 TCGA-08-0510 TCGA-08-0518 TCGA-08-0524 TCGA-12-0691 
        3.75         3.39         3.48         1.28         6.51         6.08 
TCGA-12-0778 TCGA-12-0826 TCGA-12-1096 TCGA-12-1098 TCGA-12-1602 TCGA-12-3646 
       14.83        27.78         9.11         3.98         6.38        43.20 
TCGA-14-1396 TCGA-14-1823 TCGA-15-1447 TCGA-19-0955 TCGA-19-1388 TCGA-19-1787 
        1.12        17.82        53.19        11.77        12.95        12.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-5216 TCGA-32-1973 TCGA-32-2495 TCGA-32-2616 
        6.74         4.77        13.64        21.07        14.99         7.33 
TCGA-32-2632 TCGA-32-4210 TCGA-76-4934 
        8.84         3.68         2.53 

$`5P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        24.59        10.36         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
       12.59         2.50        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 
       27.22        89.72        22.72         0.23        51.29        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 
       16.93         3.48        26.99        65.00        17.65        23.15 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
       12.23         9.86        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 
       47.11        11.34         9.24        16.18        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        9.80         7.82        19.46        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        90.97         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        73.84        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.29        18.28         4.67         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        5.46         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
        0.33        18.02        10.32        11.80        20.42        14.96 
TCGA-06-0394 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       10.29         0.26         8.05         0.16        35.01        12.33 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        4.47         9.63        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        7.43         6.35         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58        33.90         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83        30.64         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43        31.50        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 
        8.81         8.98         8.55         6.71         2.73         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.96        22.68        34.75         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0351 TCGA-08-0352 
        4.34        13.78        10.39         7.59        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.30         0.56        11.77         8.52        18.44        58.19 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
       10.72         4.80        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.40         1.61        10.39         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        25.97        24.13         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.91        20.58       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 
       30.54        21.63        11.97        11.38        15.85        14.53 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 
        3.39         9.44        25.28        13.61        59.41        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        5.39         2.89        16.50        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 
       15.95        19.30         0.79         1.38         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.93         6.12        12.43         0.99         1.94        17.75 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
        3.39         9.86        50.53        19.10         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        9.07         5.95         4.64        25.38         3.48         7.13 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 
        1.51         2.83         0.13         0.66         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55        14.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       14.20         7.79         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       15.35         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 
       15.95        22.78        21.17        21.14        12.59        19.82 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        10.62         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.88         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 
        4.77         4.54         3.09         3.65         9.14        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             1.12              0.07 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            92.61            127.56 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             7.69             10.29 
[1] "1.1 - 92.6 (7.7)"   "0.1 - 127.6 (10.3)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-87-5896 
"5P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-87-5896 
"5P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-87-5896 
"5P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D9V2, continuous
D9V3, binary
                   cls
clus                  0   1
  5P GAIN MUTATED    23  22
  5P GAIN WILD-TYPE 195 313
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     23   22
  5P GAIN WILD-TYPE  195  313
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              23               195
  MALE                22               313
D9V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  5P GAIN MUTATED                               1                   4
  5P GAIN WILD-TYPE                             9                  14
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  5P GAIN MUTATED                                40
  5P GAIN WILD-TYPE                             485
D9V5, multiclass
                                 clus
vv                                5P GAIN MUTATED 5P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 1                 9
  TREATED PRIMARY GBM                           4                14
  UNTREATED PRIMARY (DE NOVO) GBM              40               485
D9V6, binary
                   cls
clus                  0   1
  5P GAIN MUTATED    32  13
  5P GAIN WILD-TYPE 350 158
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     32   13
  5P GAIN WILD-TYPE  350  158
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO               32               350
  YES              13               158

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED     6  32
  5Q GAIN WILD-TYPE 102 413
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               38               515 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               32               413 
$`5Q GAIN MUTATED`
TCGA-02-0028 TCGA-02-0054 TCGA-02-0075 TCGA-02-0086 TCGA-02-0106 TCGA-02-0113 
       90.58         6.54        20.84         8.81        11.67        92.61 
TCGA-02-0324 TCGA-02-0456 TCGA-06-0151 TCGA-06-0195 TCGA-06-0209 TCGA-06-0397 
        7.69         3.35        46.59         7.04         3.88         5.52 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0645 TCGA-06-0649 TCGA-06-5416 TCGA-06-5856 
       70.52         4.67         3.22         2.04         6.71         3.75 
TCGA-08-0510 TCGA-08-0518 TCGA-12-0778 TCGA-12-0826 TCGA-12-1096 TCGA-12-1098 
        3.48         1.28        14.83        27.78         9.11         3.98 
TCGA-12-1602 TCGA-12-3646 TCGA-14-1396 TCGA-14-1823 TCGA-19-0955 TCGA-19-1388 
        6.38        43.20         1.12        17.82        11.77        12.95 
TCGA-19-1787 TCGA-28-2506 TCGA-28-2509 TCGA-28-5216 TCGA-32-2495 TCGA-32-2632 
       12.66         6.74         4.77        13.64        14.99         8.84 
TCGA-32-4210 TCGA-76-4934 
        3.68         2.53 

$`5Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 
       53.06        42.74        24.59        10.36         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
        3.19        15.06        12.59         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        5.49        10.19        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
       51.29        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       17.65        23.15        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 
       14.20        15.95        12.23         9.86        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 
       20.09        16.70         9.80         7.82        19.46        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        90.97         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 
       28.47        14.93        10.29        18.28         4.67         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        0.39         6.44         5.46         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       12.43        22.49         0.33        18.02        10.32        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 
       20.42        14.96        10.29         0.26         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 
       35.01        12.33         4.47         9.63        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
        5.42        20.94         7.43         6.35         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58        33.90         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83        30.64         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43        31.50        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 
        8.35         4.54         8.81         8.98         8.55         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 
        3.19        10.59         0.30         0.56        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       18.44        58.19        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
        5.95         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0780 TCGA-12-0818 
       53.10        43.10         5.49         9.11        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 
       24.76        18.48        10.62        23.51        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 
       11.97        11.38        15.85        14.53         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       25.28        13.61        59.41        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.09        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        0.79         1.38         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.94        17.75         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        7.13        17.49         7.96         3.75         3.39         9.86 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
       50.53        19.10        53.19         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.31         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 
       13.35         3.65        18.28        13.97         6.41        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 
        5.95         4.64        25.38         3.48         7.13         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        16.47         7.00         7.04         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.64         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        5.39         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.57         9.86        18.25        33.14        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.17         8.32         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        2.83         0.13         0.66         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55        14.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
        7.79         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       15.95         7.33        22.78        21.17        21.14        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.82        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             1.12              0.07 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            92.61            127.56 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            7.365            10.290 
[1] "1.1 - 92.6 (7.4)"   "0.1 - 127.6 (10.3)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"5Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"5Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"5Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D10V2, continuous
D10V3, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED    21  17
  5Q GAIN WILD-TYPE 197 318
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     21   17
  5Q GAIN WILD-TYPE  197  318
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE              21               197
  MALE                17               318
D10V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  5Q GAIN MUTATED                               1                   3
  5Q GAIN WILD-TYPE                             9                  15
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  5Q GAIN MUTATED                                34
  5Q GAIN WILD-TYPE                             491
D10V5, multiclass
                                 clus
vv                                5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 1                 9
  TREATED PRIMARY GBM                           3                15
  UNTREATED PRIMARY (DE NOVO) GBM              34               491
D10V6, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED    26  12
  5Q GAIN WILD-TYPE 356 159
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     26   12
  5Q GAIN WILD-TYPE  356  159
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO               26               356
  YES              12               159

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED     4  18
  6P GAIN WILD-TYPE 104 427
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               22               531 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               18               427 
$`6P GAIN MUTATED`
TCGA-02-0052 TCGA-02-0069 TCGA-06-0177 TCGA-06-0237 TCGA-06-0410 TCGA-08-0386 
       12.59        28.70         1.97        10.32         4.67        15.72 
TCGA-08-0516 TCGA-12-0619 TCGA-12-0662 TCGA-12-0776 TCGA-12-1092 TCGA-12-1598 
       18.44        10.39        38.17         9.11        21.63         9.44 
TCGA-14-1454 TCGA-14-1794 TCGA-15-1447 TCGA-15-1449 TCGA-19-1388 TCGA-27-1831 
       30.15         0.99        53.19         5.49        12.95        16.57 
TCGA-28-5216 TCGA-76-4934 TCGA-76-6280 TCGA-81-5911 
       13.64         2.53        11.38        17.69 

$`6P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
       14.70         3.19        15.06         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       26.99        65.00        11.67        17.65        23.15        92.61 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        90.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       28.47        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.20        12.43        22.49         0.33        18.02 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       11.80        20.42        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
       70.52         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.94         7.43         6.35         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58        33.90         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.12         4.54         3.91         7.76         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.45         0.49         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        1.55         4.77         4.96        22.68        34.75         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
        3.19        10.59         0.30         0.56         3.48        11.77 
TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
        8.52        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 
        5.95         7.17        65.88         0.10        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
       43.10         5.49        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 
       20.58       127.56         5.82         6.21        30.54        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        5.39         2.89        16.50        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 
       32.02        58.78        23.11         7.10         1.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
       40.93         6.12        12.43         1.94        17.75        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 TCGA-16-0848 
        3.39         9.86        50.53        19.10         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.31         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        9.07         5.95         4.64        25.38         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        16.47         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        1.78         6.51         5.39         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        2.30         4.80         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.51         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 
       11.77         9.80        14.20         7.79         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.83 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        14.99        15.95         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84        22.78        21.17        21.14         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.82        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       10.78        16.67         3.29         2.70        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 
        7.76         1.61         0.07 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.99              0.07 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            53.19            127.56 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            12.77              9.86 
[1] "1.0 - 53.2 (12.8)" "0.1 - 127.6 (9.9)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-87-5896 
"6P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-87-5896 
"6P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-87-5896 
"6P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D11V2, continuous
D11V3, binary
                   cls
clus                  0   1
  6P GAIN MUTATED     7  15
  6P GAIN WILD-TYPE 211 320
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      7   15
  6P GAIN WILD-TYPE  211  320
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE               7               211
  MALE                15               320
D11V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  6P GAIN MUTATED                               0                   0
  6P GAIN WILD-TYPE                            10                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  6P GAIN MUTATED                                22
  6P GAIN WILD-TYPE                             503
D11V5, multiclass
                                 clus
vv                                6P GAIN MUTATED 6P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           0                18
  UNTREATED PRIMARY (DE NOVO) GBM              22               503
D11V6, binary
                   cls
clus                  0   1
  6P GAIN MUTATED    18   4
  6P GAIN WILD-TYPE 364 167
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     18    4
  6P GAIN WILD-TYPE  364  167
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO               18               364
  YES               4               167

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED     5  16
  6Q GAIN WILD-TYPE 103 429
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               21               532 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               16               429 
$`6Q GAIN MUTATED`
TCGA-02-0052 TCGA-02-0069 TCGA-06-0177 TCGA-06-0237 TCGA-06-0410 TCGA-06-2569 
       12.59        28.70         1.97        10.32         4.67         0.43 
TCGA-08-0386 TCGA-08-0516 TCGA-12-0619 TCGA-12-0662 TCGA-12-0776 TCGA-12-1092 
       15.72        18.44        10.39        38.17         9.11        21.63 
TCGA-12-1598 TCGA-14-1454 TCGA-14-1794 TCGA-15-1447 TCGA-15-1449 TCGA-19-1388 
        9.44        30.15         0.99        53.19         5.49        12.95 
TCGA-28-5216 TCGA-76-4934 TCGA-81-5911 
       13.64         2.53        17.69 

$`6Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
       14.70         3.19        15.06         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       26.99        65.00        11.67        17.65        23.15        92.61 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        90.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       28.47        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.20        12.43        22.49         0.33        18.02 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       11.80        20.42        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
       70.52         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.94         7.43         6.35         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58        33.90         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        4.37        31.50        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 
       35.64        19.50         0.95         9.17        10.85         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 
       17.29         5.52        14.01        14.40         1.61         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
        7.17        65.88         0.10        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        5.49        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
      127.56         5.82         6.21        30.54        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 
       15.85         9.11        14.53         3.98         3.39        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       13.61         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.01        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.74         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        2.89        16.50        26.33         2.04        28.90        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 
       58.78        23.11         7.10         1.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
        6.12        12.43         1.94        17.75        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.13        17.49         7.96         3.75         3.39 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
        9.86        50.53        19.10         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
        5.95         4.64        25.38         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.51         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 
       11.77         9.80        14.20         7.79         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.83 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        14.99        15.95         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84        22.78        21.17        21.14         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.82        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 
        7.69         7.76         1.61         0.07 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.43              0.07 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            53.19            127.56 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            12.59              9.86 
[1] "0.4 - 53.2 (12.6)" "0.1 - 127.6 (9.9)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-87-5896 
"6Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-87-5896 
"6Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-87-5896 
"6Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D12V2, continuous
D12V3, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED     8  13
  6Q GAIN WILD-TYPE 210 322
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      8   13
  6Q GAIN WILD-TYPE  210  322
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE               8               210
  MALE                13               322
D12V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  6Q GAIN MUTATED                               0                   0
  6Q GAIN WILD-TYPE                            10                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  6Q GAIN MUTATED                                21
  6Q GAIN WILD-TYPE                             504
D12V5, multiclass
                                 clus
vv                                6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           0                18
  UNTREATED PRIMARY (DE NOVO) GBM              21               504
D12V6, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED    16   5
  6Q GAIN WILD-TYPE 366 166
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     16    5
  6Q GAIN WILD-TYPE  366  166
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO               16               366
  YES               5               166

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED    81 366
  7P GAIN WILD-TYPE  27  79
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              447               106 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              366                79 
$`7P GAIN MUTATED`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0016 
        9.14         4.73        18.35        23.18        10.59        55.86 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 
       77.62        20.12        42.74        10.36         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0052 
        3.58        10.72        18.28         6.84        15.06        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0070 
        6.54         2.50        19.86         9.57        19.73        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0085 
        5.49        10.19        20.84        27.22        22.72        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 
        8.81        57.76        16.93         3.48        26.99        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 
       17.65        23.15        92.61        15.65        48.95        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0430 TCGA-02-0440 
       15.91        25.71         4.37        25.12        10.55        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 
        9.24        16.18         3.35        16.80        12.92        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       16.18         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       22.72        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 
       10.75         0.20         9.21        11.74         2.33        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.80         7.82        19.46        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0164 TCGA-06-0166 
        8.65         3.19         5.46         9.44        56.84         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
       90.97         1.97        19.00         2.53        40.37        73.84 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       28.47        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0237 TCGA-06-0238 
       11.84         0.20        12.43        22.49        10.32        11.80 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 
       14.96        10.29         5.52         0.26        70.52         8.05 
TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        0.16        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0749 
       23.57         9.37        22.29        19.53         5.36         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
        5.85         5.42        20.94         7.43         6.35         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2558 TCGA-06-2559 
       26.79         8.65         7.86        13.58         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2567 TCGA-06-5408 
        9.27         2.83        30.64         5.95         4.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 
        2.73         3.75         6.12         4.54         3.91         5.36 
TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        1.45         7.36         8.28        12.85         4.77         1.55 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
       22.68        34.75         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
        7.59         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0518 
        3.19        10.59         0.30         0.56         3.48         1.28 
TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 
       10.72        15.98        17.29         5.52        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       10.39         5.95         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       14.27        24.76        18.48        10.62        23.51        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.91        20.58       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       30.54        21.63        11.97        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       14.53         3.98         3.39         9.44        25.28        13.61 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.38        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       15.09         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
       13.74         1.35         5.39        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.15         0.92 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 
        6.12        12.43         0.99         1.94        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 
        5.88         7.13        17.49         7.96         3.39         9.86 
TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0861 TCGA-16-1045 
       19.10         5.49         3.91         9.93         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 
        0.82         9.90        13.35        18.28        13.97        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
       21.86         0.43        14.27        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
       12.95         4.64        25.38         3.48         7.13        12.66 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 
        0.13         9.67         7.53         0.16        16.47         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        7.04         6.64        11.28        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        1.78         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
        9.73         7.10         9.37         9.40         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       18.25        33.14        21.30        11.51        24.72        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-28-1746 TCGA-28-1749 
       16.08         7.59         2.86        14.40         0.20         9.17 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 
        8.32         7.59         8.45         1.18         1.51         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 
        0.66         6.74         4.77         7.30         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55        14.53        11.77         9.80        14.20         7.79 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 
        4.21         8.52        10.49         5.42        15.35         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2616 TCGA-32-2632 TCGA-32-2638 
       14.83        12.23        20.78         7.33         8.84        21.17 
TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
        3.68        12.59        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 
        9.53         0.99         4.44        11.84        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.88         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       10.78        16.67         3.29        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
       20.94         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

$`7P GAIN WILD-TYPE`
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0024 TCGA-02-0026 
       35.41        20.71        82.55        20.61        53.06        24.59 
TCGA-02-0028 TCGA-02-0039 TCGA-02-0047 TCGA-02-0048 TCGA-02-0058 TCGA-02-0060 
       90.58        10.52        14.70         3.19         8.35         6.02 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0080 TCGA-02-0084 TCGA-02-0104 TCGA-02-0114 
       26.43        28.70        89.72         0.23        65.00        99.95 
TCGA-02-0258 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0432 TCGA-02-2483 
       16.54        10.59        12.39        14.50        47.11        15.29 
TCGA-06-0127 TCGA-06-0129 TCGA-06-0142 TCGA-06-0146 TCGA-06-0160 TCGA-06-0162 
        3.55        32.48         2.20        20.09        11.80         2.56 
TCGA-06-0165 TCGA-06-0178 TCGA-06-0187 TCGA-06-0219 TCGA-06-0221 TCGA-06-0240 
       10.65        53.98        26.33         0.33        18.02        20.42 
TCGA-06-0410 TCGA-06-0414 TCGA-06-0747 TCGA-06-1805 TCGA-06-2557 TCGA-06-2565 
        4.67        35.01         2.70        33.90         1.08         6.81 
TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 TCGA-06-5416 TCGA-06-6389 TCGA-06-6693 
        5.98         0.43        31.50         6.71         7.76         0.49 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0246 TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 
        4.77         4.96         3.91       108.82         3.39        53.79 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0521 TCGA-08-0524 
       11.77         8.52        18.44        58.19         4.80         6.51 
TCGA-12-0615 TCGA-12-0818 TCGA-14-0740 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 
       14.01        91.73        11.97         3.25         2.89        16.50 
TCGA-14-1402 TCGA-14-1456 TCGA-14-1821 TCGA-14-3477 TCGA-15-1444 TCGA-15-1447 
       32.02        40.93        17.75         3.75        50.53        53.19 
TCGA-16-0849 TCGA-16-0850 TCGA-16-1060 TCGA-16-1460 TCGA-19-0960 TCGA-19-0964 
       26.07        16.31         3.65         6.41         8.61         3.39 
TCGA-19-1789 TCGA-19-2620 TCGA-19-2621 TCGA-19-2625 TCGA-19-5951 TCGA-19-5956 
        3.25         4.87         1.08         4.08         8.02         6.51 
TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-27-1836 TCGA-27-1837 TCGA-27-2521 
       31.33        14.86         5.49        30.05        14.04        10.39 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1756 TCGA-28-2514 TCGA-28-5216 TCGA-32-1973 
       15.75         2.53         2.83         5.26        13.64        21.07 
TCGA-32-1991 TCGA-32-2495 TCGA-32-2615 TCGA-32-2634 TCGA-32-4208 TCGA-32-4213 
       16.93        14.99        15.95        22.78        21.14        19.82 
TCGA-32-4719 TCGA-41-4097 TCGA-76-6193 TCGA-76-6656 
       10.85         0.20         2.70         4.83 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.07              0.20 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           127.56            108.82 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            9.630            13.015 
[1] "0.1 - 127.6 (9.6)"  "0.2 - 108.8 (13.0)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-87-5896 
  "7P GAIN MUTATED" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-87-5896 
  "7P GAIN MUTATED" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-87-5896 
  "7P GAIN MUTATED" 
[1] "hr=" "1.6"
D13V2, continuous
D13V3, binary
                   cls
clus                  0   1
  7P GAIN MUTATED   177 270
  7P GAIN WILD-TYPE  41  65
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED    177  270
  7P GAIN WILD-TYPE   41   65
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE             177                41
  MALE               270                65
D13V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  7P GAIN MUTATED                               5                  12
  7P GAIN WILD-TYPE                             5                   6
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  7P GAIN MUTATED                               430
  7P GAIN WILD-TYPE                              95
D13V5, multiclass
                                 clus
vv                                7P GAIN MUTATED 7P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 5                 5
  TREATED PRIMARY GBM                          12                 6
  UNTREATED PRIMARY (DE NOVO) GBM             430                95
D13V6, binary
                   cls
clus                  0   1
  7P GAIN MUTATED   303 144
  7P GAIN WILD-TYPE  79  27
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED    303  144
  7P GAIN WILD-TYPE   79   27
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO              303                79
  YES             144                27

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED    84 367
  7Q GAIN WILD-TYPE  24  78
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              451               102 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              367                78 
$`7Q GAIN MUTATED`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0016 TCGA-02-0021 
        9.14         4.73        18.35        10.59        55.86        77.62 
TCGA-02-0023 TCGA-02-0025 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       20.12        42.74        10.36         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
       10.72        18.28         6.84        15.06        12.59         6.54 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0070 TCGA-02-0071 
        2.50        19.86         9.57        19.73        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 
       10.19        20.84        27.22        89.72        22.72        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 
        8.81        57.76        16.93         3.48        26.99        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       17.65        23.15        92.61        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0422 TCGA-02-0430 
        0.16        15.91        25.71        25.12        14.50        10.55 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        0.10        22.72        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 
       22.16        10.75         0.20         9.21        11.74         2.33 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0164 
       12.79         8.65         3.19         5.46         9.44        56.84 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.29        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
        2.73        90.97         1.97        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       73.84        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       10.32        11.80        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       70.52         8.05         0.16        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        7.43         6.35         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       13.58         0.76         4.90         9.27         2.83        30.64 
TCGA-06-2564 TCGA-06-2567 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        5.95         4.37        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.81         8.98         8.55         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 
        4.54         3.91         5.36         1.45         7.36         8.28 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-08-0244 TCGA-08-0345 
       12.85         4.77         1.55         4.77        22.68         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 
        4.34        13.78        10.39         7.59         1.28         6.41 
TCGA-08-0354 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       15.06        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0518 TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
        3.48         1.28        10.72        15.98        17.29         5.52 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.40         1.61        10.39         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       10.62        23.51        27.78         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        5.82         6.21        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
        9.11        14.53         3.98         3.39         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       13.61         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        11.77        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       15.09         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
       13.74         1.35         5.39        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1458 
       58.78        23.11         7.10        30.15         0.92         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.94        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
        7.13        17.49         7.96         3.39         9.86        19.10 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        5.49         3.91         9.93         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        9.90        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0962 TCGA-19-0963 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
        0.43        14.27        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1791 
        4.64        25.38         3.48         7.13        12.66         0.13 
TCGA-19-2619 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        9.67         7.53         0.16        16.47         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
        6.64        11.28        18.64         4.73         7.96         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        5.39         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
       31.33         7.10         9.37         9.40         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       18.25        33.14        21.30        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-28-1746 
       10.39        10.39        16.08         7.59         2.86         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        1.51         0.13         0.66         6.74         4.77         7.30 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        3.91         9.04        14.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
        7.79         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 
        7.33         8.84        21.17         3.68        12.59        10.62 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
       11.84        11.54         7.73         3.45        20.88         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

$`7Q GAIN WILD-TYPE`
TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0024 
       23.18        35.41        20.71        82.55        20.61        53.06 
TCGA-02-0026 TCGA-02-0028 TCGA-02-0039 TCGA-02-0047 TCGA-02-0048 TCGA-02-0058 
       24.59        90.58        10.52        14.70         3.19         8.35 
TCGA-02-0060 TCGA-02-0068 TCGA-02-0069 TCGA-02-0084 TCGA-02-0104 TCGA-02-0114 
        6.02        26.43        28.70         0.23        65.00        99.95 
TCGA-02-0333 TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 TCGA-02-2483 TCGA-06-0127 
        4.37        10.59        12.39        47.11        15.29         3.55 
TCGA-06-0129 TCGA-06-0142 TCGA-06-0146 TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 
       32.48         2.20        20.09        11.80         2.56        10.65 
TCGA-06-0178 TCGA-06-0219 TCGA-06-0221 TCGA-06-0240 TCGA-06-0410 TCGA-06-0414 
       53.98         0.33        18.02        20.42         4.67        35.01 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 
       33.90         1.08         6.81         5.98         0.43        31.50 
TCGA-06-5416 TCGA-06-6389 TCGA-06-6693 TCGA-06-6701 TCGA-08-0245 TCGA-08-0246 
        6.71         7.76         0.49         4.96        34.75         3.91 
TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 TCGA-08-0355 TCGA-08-0512 TCGA-08-0514 
      108.82         3.39        53.79        22.52        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0521 TCGA-08-0524 TCGA-12-0615 TCGA-12-0827 
       18.44        58.19         4.80         6.51        14.01        38.76 
TCGA-12-1091 TCGA-12-3652 TCGA-14-0740 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 
       30.54        34.52        11.97         3.25         2.89        16.50 
TCGA-14-1402 TCGA-14-1453 TCGA-14-1456 TCGA-14-1821 TCGA-14-3477 TCGA-15-1444 
       32.02         1.15        40.93        17.75         3.75        50.53 
TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-16-1056 TCGA-16-1060 TCGA-19-0960 
       53.19        26.07        16.31        13.35         3.65         8.61 
TCGA-19-0964 TCGA-19-1789 TCGA-19-2620 TCGA-19-2621 TCGA-19-2625 TCGA-19-5951 
        3.39         3.25         4.87         1.08         4.08         8.02 
TCGA-19-5956 TCGA-26-5133 TCGA-26-5134 TCGA-27-1836 TCGA-27-2527 TCGA-27-2528 
        6.51        14.86         5.49        30.05        14.40        15.75 
TCGA-28-1756 TCGA-28-2514 TCGA-28-5208 TCGA-28-5216 TCGA-32-1973 TCGA-32-2615 
        2.83         5.26        15.55        13.64        21.07        15.95 
TCGA-32-2634 TCGA-32-4208 TCGA-32-4213 TCGA-32-4719 TCGA-41-4097 TCGA-76-6193 
       22.78        21.14        19.82        10.85         0.20         2.70 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.07              0.20 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           127.56            108.82 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            9.570            13.825 
[1] "0.1 - 127.6 (9.6)"  "0.2 - 108.8 (13.8)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-87-5896 
  "7Q GAIN MUTATED" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-87-5896 
  "7Q GAIN MUTATED" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-87-5896 
  "7Q GAIN MUTATED" 
[1] "hr=" "1.6"
D14V2, continuous
D14V3, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED   175 276
  7Q GAIN WILD-TYPE  43  59
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED    175  276
  7Q GAIN WILD-TYPE   43   59
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE             175                43
  MALE               276                59
D14V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  7Q GAIN MUTATED                               5                  12
  7Q GAIN WILD-TYPE                             5                   6
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  7Q GAIN MUTATED                               434
  7Q GAIN WILD-TYPE                              91
D14V5, multiclass
                                 clus
vv                                7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 5                 5
  TREATED PRIMARY GBM                          12                 6
  UNTREATED PRIMARY (DE NOVO) GBM             434                91
D14V6, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED   306 145
  7Q GAIN WILD-TYPE  76  26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED    306  145
  7Q GAIN WILD-TYPE   76   26
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO              306                76
  YES             145                26

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED     7  40
  8P GAIN WILD-TYPE 101 405
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               47               506 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               40               405 
$`8P GAIN MUTATED`
TCGA-02-0010 TCGA-02-0024 TCGA-02-0055 TCGA-02-0074 TCGA-02-0075 TCGA-02-0084 
       35.41        53.06         2.50        10.19        20.84         0.23 
TCGA-02-0325 TCGA-06-0128 TCGA-06-0146 TCGA-06-0177 TCGA-06-0209 TCGA-06-0211 
       10.62        22.72        20.09         1.97         3.88        11.84 
TCGA-06-0409 TCGA-06-0686 TCGA-06-2569 TCGA-06-5856 TCGA-06-6389 TCGA-06-6694 
       70.52         9.37         0.43         3.75         7.76         7.36 
TCGA-08-0350 TCGA-08-0351 TCGA-12-0616 TCGA-12-0819 TCGA-12-0827 TCGA-12-1099 
        3.39        53.79        14.40        24.76        38.76         3.39 
TCGA-12-1602 TCGA-12-3646 TCGA-14-0817 TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 
        6.38        43.20         5.39        16.50         2.04        28.90 
TCGA-14-1825 TCGA-14-3477 TCGA-19-1388 TCGA-19-1392 TCGA-27-1834 TCGA-27-2521 
        7.63         3.75        12.95         3.48        33.14        10.39 
TCGA-28-1746 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-32-1970 TCGA-32-1976 
        0.20         7.79         4.21         8.52        15.35         0.49 
TCGA-32-1978 TCGA-32-2632 TCGA-41-2573 TCGA-41-4097 TCGA-41-5651 
       15.85         8.84         8.94         0.20        11.54 

$`8P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 
        9.14         4.73        18.35        23.18        10.59        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.55        20.61        55.86        77.62        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.06        12.59         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       27.22        89.72        22.72        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 
       14.20        15.95        12.23         9.86         7.69         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 
       13.02         0.23         2.20         2.73        90.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       19.00         2.53        40.37        73.84        26.33        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       14.93        10.29        18.28         4.67         7.04         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 
        0.39         6.44         5.46         4.96         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       22.49         0.33        18.02        10.32        11.80        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 
       14.96        10.29         5.52         0.26         4.67         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        0.16        35.01        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        2.04        23.57        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58        33.90 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 
        5.95         6.81         5.98         4.37        31.50        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 
        6.71         2.73         6.12         4.54         3.91         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        1.45         0.49         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 
        1.74         4.34        13.78        10.39         7.59         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.30         0.56         3.48        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
       17.29         5.52        14.01         1.61        10.39         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 
       18.48        10.62        23.51        27.78         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 
       11.38        15.85         9.11        14.53         3.98         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       25.28        13.61        59.41        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.09        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0866 
       11.24        13.74         3.25         1.35         2.89        26.33 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.75        17.82         5.88         7.13        17.49         7.96 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.39         9.86        50.53        19.10        53.19         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91         9.93        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 
        3.39        10.75         9.07         5.95         4.64        25.38 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       16.08         7.59         2.86        14.40        15.75         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.17         8.32         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        2.83         0.13         0.66         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5220 TCGA-28-6450 TCGA-32-1973 
        9.80        14.20        13.64        10.49         5.42        21.07 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
        0.10        19.50         1.18         4.67        12.69        14.83 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        14.99        15.95         7.33 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        21.17        21.14         3.68        12.59        19.82 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 
       10.85        10.62         0.85        13.35         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        4.44        11.84         7.73         3.45        20.88         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.20              0.07 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            70.52            127.56 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             8.94             10.16 
[1] "0.2 - 70.5 (8.9)"   "0.1 - 127.6 (10.2)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-87-5896 
"8P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-87-5896 
"8P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-87-5896 
"8P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D15V2, continuous
D15V3, binary
                   cls
clus                  0   1
  8P GAIN MUTATED    22  25
  8P GAIN WILD-TYPE 196 310
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     22   25
  8P GAIN WILD-TYPE  196  310
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE              22               196
  MALE                25               310
D15V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  8P GAIN MUTATED                               0                   2
  8P GAIN WILD-TYPE                            10                  16
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  8P GAIN MUTATED                                45
  8P GAIN WILD-TYPE                             480
D15V5, multiclass
                                 clus
vv                                8P GAIN MUTATED 8P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           2                16
  UNTREATED PRIMARY (DE NOVO) GBM              45               480
D15V6, binary
                   cls
clus                  0   1
  8P GAIN MUTATED    31  16
  8P GAIN WILD-TYPE 351 155
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     31   16
  8P GAIN WILD-TYPE  351  155
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO               31               351
  YES              16               155

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED     9  44
  8Q GAIN WILD-TYPE  99 401
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               53               500 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               44               401 
$`8Q GAIN MUTATED`
TCGA-02-0010 TCGA-02-0037 TCGA-02-0055 TCGA-02-0074 TCGA-02-0075 TCGA-02-0084 
       35.41         3.58         2.50        10.19        20.84         0.23 
TCGA-02-0104 TCGA-02-0325 TCGA-02-2483 TCGA-06-0128 TCGA-06-0146 TCGA-06-0177 
       65.00        10.62        15.29        22.72        20.09         1.97 
TCGA-06-0209 TCGA-06-0211 TCGA-06-0409 TCGA-06-0686 TCGA-06-2569 TCGA-06-5856 
        3.88        11.84        70.52         9.37         0.43         3.75 
TCGA-06-6389 TCGA-06-6694 TCGA-08-0350 TCGA-08-0351 TCGA-08-0516 TCGA-12-0616 
        7.76         7.36         3.39        53.79        18.44        14.40 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0827 TCGA-12-1099 TCGA-12-1602 TCGA-12-3646 
       91.73        24.76        38.76         3.39         6.38        43.20 
TCGA-14-0817 TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 TCGA-14-1456 TCGA-14-1825 
        5.39        16.50         2.04        28.90        40.93         7.63 
TCGA-14-3477 TCGA-19-1388 TCGA-19-1392 TCGA-27-1834 TCGA-27-2521 TCGA-28-1746 
        3.75        12.95         3.48        33.14        10.39         0.20 
TCGA-28-5204 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-32-1970 TCGA-32-1976 
        3.91         7.79         4.21         8.52        15.35         0.49 
TCGA-32-1978 TCGA-32-2632 TCGA-41-2573 TCGA-41-4097 TCGA-41-5651 
       15.85         8.84         8.94         0.20        11.54 

$`8Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 
        9.14         4.73        18.35        23.18        10.59        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.06        12.59         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       27.22        89.72        22.72        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
       16.93         3.48        26.99        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 
       15.95        12.23         9.86         7.69         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       16.80        12.92        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 
        4.04        47.31         0.10         3.55        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 
        9.21         2.20        11.74         2.33        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        7.82        19.46        46.59        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.20         2.73        90.97        53.98        19.00         2.53 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       40.37        73.84        26.33        28.47        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       18.28         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        5.46         4.96         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       18.02        10.32        11.80        20.42        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        5.52         0.26         4.67         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
        5.42        20.94         7.43         6.35         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58        33.90         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83        30.64         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        5.98         4.37        31.50        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        6.12         4.54         3.91         5.36         1.45         0.49 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
       13.78        10.39         7.59         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        3.48        11.77         8.52        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
        1.61        10.39         5.95         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       14.83        14.27        18.48        10.62        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 
        3.98         9.44        25.28        13.61        59.41        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.89        26.33        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
        1.15        30.15         0.92         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        1.94        17.75        17.82         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
        7.96         3.39         9.86        50.53        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
        5.49         3.91         9.93        26.07        16.31         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
       13.97         6.41        11.77        21.86         8.61         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 
       14.27         3.39        10.75         9.07         5.95         4.64 
TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
       25.38         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       18.25        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.51         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        7.30         5.26         9.04        15.55        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5220 TCGA-28-6450 TCGA-32-1973 
        9.80        14.20        13.64        10.49         5.42        21.07 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
        0.10        19.50         1.18         4.67        12.69        14.83 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        14.99        15.95         7.33 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        21.17        21.14         3.68        12.59        19.82 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 
       10.85        10.62         0.85        13.35         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        4.44        11.84         7.73         3.45        20.88         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.20              0.07 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            91.73            127.56 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             9.37              9.98 
[1] "0.2 - 91.7 (9.4)"   "0.1 - 127.6 (10.0)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"8Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"8Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"8Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
D16V3, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED    25  28
  8Q GAIN WILD-TYPE 193 307
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     25   28
  8Q GAIN WILD-TYPE  193  307
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              25               193
  MALE                28               307
D16V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  8Q GAIN MUTATED                               0                   1
  8Q GAIN WILD-TYPE                            10                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  8Q GAIN MUTATED                                52
  8Q GAIN WILD-TYPE                             473
D16V5, multiclass
                                 clus
vv                                8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              52               473
D16V6, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED    36  17
  8Q GAIN WILD-TYPE 346 154
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     36   17
  8Q GAIN WILD-TYPE  346  154
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO               36               346
  YES              17               154

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED     9  36
  9P GAIN WILD-TYPE  99 409
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               45               508 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               36               409 
$`9P GAIN MUTATED`
TCGA-02-0001 TCGA-02-0025 TCGA-02-0051 TCGA-02-0052 TCGA-02-0069 TCGA-02-0074 
        9.14        42.74        15.06        12.59        28.70        10.19 
TCGA-02-0266 TCGA-02-0281 TCGA-02-0325 TCGA-02-0332 TCGA-02-0456 TCGA-06-0129 
       17.69         3.98        10.62        25.71         3.35        32.48 
TCGA-06-0195 TCGA-06-0216 TCGA-06-0410 TCGA-06-0644 TCGA-06-1087 TCGA-06-2569 
        7.04        22.49         4.67        12.33         3.58         0.43 
TCGA-06-5408 TCGA-06-5416 TCGA-12-0691 TCGA-12-0773 TCGA-12-1096 TCGA-12-3646 
       11.21         6.71         6.08        43.10         9.11        43.20 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0817 TCGA-14-3477 TCGA-15-1449 TCGA-19-0962 
       13.74         3.25         5.39         3.75         5.49         0.43 
TCGA-19-1392 TCGA-19-4065 TCGA-26-5136 TCGA-27-1834 TCGA-27-1838 TCGA-28-1751 
        3.48         7.04         1.22        33.14        11.51         7.59 
TCGA-28-2509 TCGA-28-5204 TCGA-28-5215 TCGA-28-5216 TCGA-32-1979 TCGA-32-2615 
        4.77         3.91         7.79        13.64        19.50        15.95 
TCGA-41-3915 TCGA-76-4934 TCGA-76-6280 
       11.84         2.53        11.38 

$`9P GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
        6.54         2.50        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 
       19.73        26.43        25.05         5.49        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.90        10.75        14.47        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 
       12.23         9.86         7.69         0.16        15.91         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
       11.34         9.24        16.18        16.80        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        0.10         3.55        22.72        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.29        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.73        90.97         1.97        53.98        19.00         2.53 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       40.37        73.84        26.33        28.47        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
       18.28         4.67         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 
        3.88         4.96        11.84         0.20        12.43         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       18.02        10.32        11.80        20.42        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        5.52         0.26        70.52         8.05         0.16        35.01 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 
        5.42        20.94         7.43         6.35        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58        33.90         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2570 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        4.37        31.50         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.98         8.55         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.30         0.56         3.48        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
        5.95         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       24.13         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.97        11.38        15.85        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 
        9.44        25.28        13.61         6.38        59.41        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 
       23.05         2.24        11.24         1.35         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.94        17.75        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 
        5.88         7.13        17.49         7.96         3.39         9.86 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       50.53        19.10        53.19         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        8.61        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
       12.95         4.64        25.38         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08        16.47         7.00         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 
       18.25        21.30        30.05        14.04        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1752 TCGA-28-1753 
        0.20         2.53         9.17         8.32         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 
        1.51         2.83         0.13         0.66         6.74         7.30 
TCGA-28-2514 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        5.26         9.04        15.55        14.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       14.20         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1980 TCGA-32-1982 
       21.07         0.49         0.10        15.85         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.33         8.84        22.78        21.17        21.14         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.82        10.85        10.62         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 
        8.94         9.53         0.99         4.44         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       10.78        16.67         3.29         2.70        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.43              0.07 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            43.20            127.56 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             9.14              9.98 
[1] "0.4 - 43.2 (9.1)"   "0.1 - 127.6 (10.0)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-87-5896 
"9P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-87-5896 
"9P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-87-5896 
"9P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D17V2, continuous
D17V3, binary
                   cls
clus                  0   1
  9P GAIN MUTATED    24  21
  9P GAIN WILD-TYPE 194 314
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     24   21
  9P GAIN WILD-TYPE  194  314
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE              24               194
  MALE                21               314
D17V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  9P GAIN MUTATED                               0                   0
  9P GAIN WILD-TYPE                            10                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  9P GAIN MUTATED                                45
  9P GAIN WILD-TYPE                             480
D17V5, multiclass
                                 clus
vv                                9P GAIN MUTATED 9P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           0                18
  UNTREATED PRIMARY (DE NOVO) GBM              45               480
D17V6, binary
                   cls
clus                  0   1
  9P GAIN MUTATED    30  15
  9P GAIN WILD-TYPE 352 156
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     30   15
  9P GAIN WILD-TYPE  352  156
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO               30               352
  YES              15               156

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    12  58
  9Q GAIN WILD-TYPE  96 387
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               70               483 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               58               387 
$`9Q GAIN MUTATED`
TCGA-02-0001 TCGA-02-0025 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0069 
        9.14        42.74        15.06        12.59         6.54        28.70 
TCGA-02-0074 TCGA-02-0106 TCGA-02-0114 TCGA-02-0266 TCGA-02-0281 TCGA-02-0325 
       10.19        11.67        99.95        17.69         3.98        10.62 
TCGA-02-0332 TCGA-02-0456 TCGA-06-0129 TCGA-06-0166 TCGA-06-0175 TCGA-06-0185 
       25.71         3.35        32.48         5.29         2.73        73.84 
TCGA-06-0195 TCGA-06-0216 TCGA-06-0221 TCGA-06-0410 TCGA-06-0413 TCGA-06-0644 
        7.04        22.49        18.02         4.67         0.16        12.33 
TCGA-06-1087 TCGA-06-2562 TCGA-06-2569 TCGA-06-5408 TCGA-08-0386 TCGA-12-0618 
        3.58         2.83         0.43        11.21        15.72         1.61 
TCGA-12-0654 TCGA-12-0691 TCGA-12-0773 TCGA-12-0776 TCGA-12-0818 TCGA-12-0827 
        7.17         6.08        43.10         9.11        91.73        38.76 
TCGA-12-1088 TCGA-12-1096 TCGA-12-1098 TCGA-12-3646 TCGA-12-5299 TCGA-14-0790 
      127.56         9.11         3.98        43.20         3.22        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-1821 TCGA-14-3477 TCGA-15-1449 
        3.25         1.35         5.39        17.75         3.75         5.49 
TCGA-19-0962 TCGA-19-1392 TCGA-19-4065 TCGA-26-5136 TCGA-26-6174 TCGA-27-1834 
        0.43         3.48         7.04         1.22         2.30        33.14 
TCGA-27-1838 TCGA-28-1751 TCGA-28-2509 TCGA-28-5204 TCGA-28-5215 TCGA-28-5216 
       11.51         7.59         4.77         3.91         7.79        13.64 
TCGA-32-1976 TCGA-32-1979 TCGA-32-1991 TCGA-32-2495 TCGA-32-2615 TCGA-41-2573 
        0.49        19.50        16.93        14.99        15.95         8.94 
TCGA-41-3915 TCGA-76-4934 TCGA-76-4935 TCGA-76-6280 
       11.84         2.53        10.78        11.38 

$`9Q GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        2.50        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       26.43        25.05         5.49        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
        3.48        26.99        65.00        17.65        23.15        92.61 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 
       15.65        48.95        16.54        16.90        10.75        14.47 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        0.16        15.91         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        2.56        56.84        10.65        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        0.23         2.20        90.97         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
        2.53        40.37        26.33        28.47        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
       18.28         4.67         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 
        3.88         4.96        11.84         0.20        12.43         0.33 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       10.32        11.80        20.42        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0414 TCGA-06-0645 TCGA-06-0646 
        0.26        70.52         8.05        35.01         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        7.43         6.35        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2563 
       33.90         1.08         0.76         4.90         9.27        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5410 
        5.95         6.81         5.98         4.37        31.50         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.12         4.54         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.36         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        4.77         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       10.85         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       11.77         8.52        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0619 TCGA-12-0620 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       14.40        10.39         5.95        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       25.97        24.13         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 
       53.10         5.49        14.83        14.27        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 
       10.62        23.51        27.78         8.91        20.58         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
       14.53         3.39         9.44        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       59.41        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       11.74        13.08         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0862 TCGA-14-0865 
        6.18        23.05         2.24        11.24         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.94        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.13        17.49         7.96         3.39         9.86        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       19.10        53.19         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       14.27         3.39        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
        4.64        25.38         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
       16.47         7.00         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 
        9.37         9.40        14.86         5.49         8.84         1.58 
TCGA-26-6173 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 
        7.92         4.80        16.57         9.86        18.25        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       30.05        14.04        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        9.17         8.32         8.45         1.18         1.51         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 
        0.13         0.66         6.74         7.30         5.26         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5218 
       15.55        14.53        11.77         9.80        14.20         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 
        8.52        10.49         5.42        15.35        21.07         0.10 
TCGA-32-1978 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 
       15.85         1.18         4.67        12.69        14.83        12.23 
TCGA-32-2494 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       20.78         7.33         8.84        22.78        21.17        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        19.82        10.85        10.62         0.85 
TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 
       13.35         9.53         0.99         4.44         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
       16.67         3.29         2.70        17.06         8.32        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.16              0.07 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           127.56            108.82 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
            9.125            10.030 
[1] "0.2 - 127.6 (9.1)"  "0.1 - 108.8 (10.0)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"9Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"9Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-87-5896 
"9Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D18V2, continuous
D18V3, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED    35  35
  9Q GAIN WILD-TYPE 183 300
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     35   35
  9Q GAIN WILD-TYPE  183  300
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE              35               183
  MALE                35               300
D18V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  9Q GAIN MUTATED                               0                   2
  9Q GAIN WILD-TYPE                            10                  16
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  9Q GAIN MUTATED                                68
  9Q GAIN WILD-TYPE                             457
D18V5, multiclass
                                 clus
vv                                9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           2                16
  UNTREATED PRIMARY (DE NOVO) GBM              68               457
D18V6, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED    50  20
  9Q GAIN WILD-TYPE 332 151
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     50   20
  9Q GAIN WILD-TYPE  332  151
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO               50               332
  YES              20               151

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED     4   8
  10P GAIN WILD-TYPE 104 437
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                541 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 8                437 
$`10P GAIN MUTATED`
TCGA-02-0011 TCGA-02-0069 TCGA-02-0080 TCGA-02-0087 TCGA-02-0114 TCGA-06-2569 
       20.71        28.70        89.72        57.76        99.95         0.43 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0517 TCGA-12-1099 TCGA-14-3477 TCGA-32-2632 
        3.39        53.79        58.19         3.39         3.75         8.84 

$`10P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 
        5.49        10.19        20.84        27.22        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
       51.29         8.81        16.93         3.48        26.99        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 
       11.67        17.65        23.15        92.61        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.90        17.69        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         0.16        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.24        16.18         3.35        16.80        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        0.10         3.55        22.72        32.48        10.52        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.07        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        7.82        19.46        46.59        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        90.97         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        73.84        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       12.43        22.49         0.33        18.02        10.32        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.67         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.94         7.43         6.35         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58        33.90         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        4.37        31.50        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 
        1.74         4.34        13.78        10.39         7.59         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.30         0.56         3.48        11.77         8.52        18.44 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        5.52        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.98         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.94        17.75        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.13        17.49         7.96         3.39         9.86        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        5.95        12.95         4.64        25.38         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        16.47         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        1.78         6.51         5.39         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
       15.95         7.33        22.78        21.17        21.14         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.82        10.85        10.62         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        20.88         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.43               0.07 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             99.95             127.56 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            24.705              9.900 
[1] "0.4 - 100.0 (24.7)" "0.1 - 127.6 (9.9)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-87-5896 
"10P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-87-5896 
"10P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-87-5896 
"10P GAIN WILD-TYPE" 
[1] "hr=" "2.7"
D19V2, continuous
D19V3, binary
                    cls
clus                   0   1
  10P GAIN MUTATED     8   4
  10P GAIN WILD-TYPE 210 331
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      8    4
  10P GAIN WILD-TYPE  210  331
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE                8                210
  MALE                  4                331
D19V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  10P GAIN MUTATED                               0                   1
  10P GAIN WILD-TYPE                            10                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  10P GAIN MUTATED                                11
  10P GAIN WILD-TYPE                             514
D19V5, multiclass
                                 clus
vv                                10P GAIN MUTATED 10P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            1                 17
  UNTREATED PRIMARY (DE NOVO) GBM               11                514
D19V6, binary
                    cls
clus                   0   1
  10P GAIN MUTATED     8   4
  10P GAIN WILD-TYPE 374 167
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      8    4
  10P GAIN WILD-TYPE  374  167
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 8                374
  YES                4                167

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED     0   3
  10Q GAIN WILD-TYPE 108 442
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 3                550 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 3                442 
$`10Q GAIN MUTATED`
TCGA-02-0011 TCGA-12-1099 TCGA-32-2632 
       20.71         3.39         8.84 

$`10Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       90.97         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       73.84        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
        0.33        18.02        10.32        11.80        20.42        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.29         5.52         0.26        70.52         4.67         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        0.16        35.01        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.14         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.35         3.58        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       33.90         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.96        22.68        34.75         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       18.44        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       10.39         5.95         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         3.98         9.44        25.28        13.61 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.38        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.09        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.12        12.43         0.99         1.94        17.75        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.39         9.86        50.53        19.10        53.19         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91         9.93        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.48         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.72        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.32         7.59         8.45         1.18         1.51         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        0.13         0.66         6.74         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55        14.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       14.20         7.79        13.64         4.21         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.35        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.83        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 
       12.23        20.78        14.99        15.95         7.33        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.17        21.14         3.68        12.59        19.82        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.62         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       20.88         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              3.39               0.07 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             20.71             127.56 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              8.84               9.98 
[1] "3.4 - 20.7 (8.8)"   "0.1 - 127.6 (10.0)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"10Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"10Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"10Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D20V2, continuous
D20V3, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     2   1
  10Q GAIN WILD-TYPE 216 334
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      2    1
  10Q GAIN WILD-TYPE  216  334
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                2                216
  MALE                  1                334
D20V4, continuous
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 2                406 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0014         TCGA-02-0015         TCGA-02-0016 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0021         TCGA-02-0023         TCGA-02-0024 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0025         TCGA-02-0026         TCGA-02-0027 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0028         TCGA-02-0033         TCGA-02-0034 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0037         TCGA-02-0038         TCGA-02-0039 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0043         TCGA-02-0046         TCGA-02-0047 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0051         TCGA-02-0052         TCGA-02-0054 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0055         TCGA-02-0057         TCGA-02-0058 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0059         TCGA-02-0060         TCGA-02-0064 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0068         TCGA-02-0069         TCGA-02-0070 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0071         TCGA-02-0074         TCGA-02-0075 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0079         TCGA-02-0080         TCGA-02-0083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0084         TCGA-02-0085         TCGA-02-0086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0087         TCGA-02-0089         TCGA-02-0099 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0102         TCGA-02-0104         TCGA-02-0106 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0107         TCGA-02-0111         TCGA-02-0113 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0114         TCGA-02-0115         TCGA-02-0116 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0337         TCGA-02-0338         TCGA-02-0339 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0422         TCGA-02-0430         TCGA-02-0432 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0440         TCGA-02-0446         TCGA-02-0451 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-0456         TCGA-02-2466         TCGA-02-2470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-02-2483         TCGA-02-2485         TCGA-02-2486 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0125         TCGA-06-0126         TCGA-06-0127 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0128         TCGA-06-0129         TCGA-06-0130 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0138         TCGA-06-0139         TCGA-06-0141 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0149         TCGA-06-0154 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0155         TCGA-06-0157         TCGA-06-0158 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0168 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0169         TCGA-06-0171         TCGA-06-0174 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0179         TCGA-06-0182         TCGA-06-0184 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0185         TCGA-06-0187         TCGA-06-0188 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0190         TCGA-06-0192         TCGA-06-0195 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0211         TCGA-06-0214 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0221         TCGA-06-0238 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0644         TCGA-06-0646 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0743         TCGA-06-0744 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0750 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0878 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0879         TCGA-06-0881         TCGA-06-0882 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-0939         TCGA-06-1084         TCGA-06-1086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1087         TCGA-06-1800         TCGA-06-1801 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-1802         TCGA-06-1805         TCGA-06-2557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5858 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6695         TCGA-06-6697 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-08-0244         TCGA-08-0245 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0350         TCGA-08-0351         TCGA-08-0353 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0509         TCGA-08-0510 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0512         TCGA-08-0514         TCGA-08-0517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0521         TCGA-08-0524 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0656 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0769         TCGA-12-0772         TCGA-12-0773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0775         TCGA-12-0776         TCGA-12-0778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0780         TCGA-12-0819         TCGA-12-0820 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0821         TCGA-12-0822         TCGA-12-0827 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1090         TCGA-12-1091         TCGA-12-1092 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1093         TCGA-12-1094         TCGA-12-1095 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1096         TCGA-12-1097         TCGA-12-1098 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5299 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-12-5301         TCGA-14-0736         TCGA-14-0740 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0783         TCGA-14-0786         TCGA-14-0787 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0789         TCGA-14-0790         TCGA-14-0812 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0813         TCGA-14-0817         TCGA-14-0862 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0865         TCGA-14-0866         TCGA-14-0867 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-0871         TCGA-14-1034         TCGA-14-1037 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1043         TCGA-14-1395         TCGA-14-1396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1401         TCGA-14-1402         TCGA-14-1450 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1451         TCGA-14-1452         TCGA-14-1453 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1454         TCGA-14-1456         TCGA-14-1458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1795         TCGA-14-1821 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1823         TCGA-14-1825         TCGA-14-1827 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-1829         TCGA-14-2554         TCGA-14-2555 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-14-3477         TCGA-14-4157         TCGA-15-0742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-15-1446         TCGA-15-1447         TCGA-15-1449 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-0960         TCGA-19-0962         TCGA-19-0964 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1389 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1390         TCGA-19-1392         TCGA-19-1786 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-1787         TCGA-19-1789         TCGA-19-2619 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2623         TCGA-19-2631 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5947         TCGA-19-5950         TCGA-19-5951 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5952         TCGA-19-5954         TCGA-19-5956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1440         TCGA-26-1442 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-1443         TCGA-26-1799         TCGA-26-5132 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-5133         TCGA-26-5134         TCGA-26-5139 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1749 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1750         TCGA-28-1751         TCGA-28-1752 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5211 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5219         TCGA-28-5220 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-1976         TCGA-32-1982         TCGA-32-1986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-32-2615         TCGA-41-2571         TCGA-41-2573 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-74-6573         TCGA-74-6575 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-81-5910 
"10Q GAIN WILD-TYPE" 
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  10Q GAIN MUTATED                               0                   0
  10Q GAIN WILD-TYPE                            10                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  10Q GAIN MUTATED                                 3
  10Q GAIN WILD-TYPE                             522
D20V5, multiclass
                                 clus
vv                                10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            0                 18
  UNTREATED PRIMARY (DE NOVO) GBM                3                522
D20V6, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     1   2
  10Q GAIN WILD-TYPE 381 169
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      1    2
  10Q GAIN WILD-TYPE  381  169
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 1                381
  YES                2                169

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED     3  10
  11P GAIN WILD-TYPE 105 435
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                13                540 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                10                435 
$`11P GAIN MUTATED`
TCGA-02-0014 TCGA-02-0054 TCGA-06-0221 TCGA-06-0743 TCGA-06-1087 TCGA-12-0826 
       82.55         6.54        18.02        22.29         3.58        27.78 
TCGA-12-0827 TCGA-12-1093 TCGA-12-1598 TCGA-19-1388 TCGA-19-4065 TCGA-27-2521 
       38.76        11.97         9.44        12.95         7.04        10.39 
TCGA-27-2526 
        2.86 

$`11P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       20.71        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
        3.19        15.06        12.59         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       26.99        65.00        11.67        17.65        23.15        92.61 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        90.97 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       10.32        11.80        20.42        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        0.26        70.52         4.67         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
        9.37        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 
        5.42        20.94         7.43         6.35        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58        33.90         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.12         4.54         3.91         7.76         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.45         0.49         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        1.55         4.77         4.96        22.68        34.75         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       11.77         8.52        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.40         1.61        10.39         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       10.62        23.51         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        6.21        30.54        21.63        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
       14.53         3.98         3.39        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.52        11.74        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.74         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.94        17.75        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.13        17.49         7.96         3.75         3.39 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
        9.86        50.53        19.10        53.19         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
       10.75         9.07         5.95         4.64        25.38         3.48 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        1.78         6.51         5.39         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
       16.08         7.59        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.17         8.32         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        2.83         0.13         0.66         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
        9.80        14.20         7.79        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.83 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        14.99        15.95         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84        22.78        21.17        21.14         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.82        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              2.86               0.07 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             82.55             127.56 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             11.97               9.88 
[1] "2.9 - 82.5 (12.0)" "0.1 - 127.6 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-87-5896 
"11P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-87-5896 
"11P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-87-5896 
"11P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D21V2, continuous
D21V3, binary
                    cls
clus                   0   1
  11P GAIN MUTATED     6   7
  11P GAIN WILD-TYPE 212 328
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      6    7
  11P GAIN WILD-TYPE  212  328
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE                6                212
  MALE                  7                328
D21V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  11P GAIN MUTATED                               0                   0
  11P GAIN WILD-TYPE                            10                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  11P GAIN MUTATED                                13
  11P GAIN WILD-TYPE                             512
D21V5, multiclass
                                 clus
vv                                11P GAIN MUTATED 11P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            0                 18
  UNTREATED PRIMARY (DE NOVO) GBM               13                512
D21V6, binary
                    cls
clus                   0   1
  11P GAIN MUTATED    10   3
  11P GAIN WILD-TYPE 372 168
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     10    3
  11P GAIN WILD-TYPE  372  168
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                10                372
  YES                3                168

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED     2  11
  11Q GAIN WILD-TYPE 106 434
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                13                540 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                11                434 
$`11Q GAIN MUTATED`
TCGA-02-0014 TCGA-02-2466 TCGA-06-0128 TCGA-06-0175 TCGA-06-0221 TCGA-06-1086 
       82.55        16.80        22.72         2.73        18.02         6.35 
TCGA-06-1087 TCGA-12-0818 TCGA-12-0826 TCGA-12-0827 TCGA-19-1388 TCGA-19-4065 
        3.58        91.73        27.78        38.76        12.95         7.04 
TCGA-27-2521 
       10.39 

$`11Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       20.71        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
        3.35        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 
        0.26         4.04        47.31         0.10         3.55        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
       13.02         0.23         2.20        90.97         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       19.00         2.53        40.37        73.84        26.33        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       14.93        10.29        18.28         4.67         7.04         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.20        12.43        22.49         0.33        10.32        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.67         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       20.94         7.43        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       33.90         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.96        22.68        34.75         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       18.44        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       10.39         5.95         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0828 
       14.27        24.76        18.48        10.62        23.51         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.94        17.75        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        7.13        17.49         7.96         3.75         3.39         9.86 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
       50.53        19.10        53.19         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.31         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        9.07         5.95         4.64        25.38         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 
        7.53         0.16         4.08        16.47         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       30.05        14.04        11.51        24.72        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.17         8.32         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        2.83         0.13         0.66         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
        9.80        14.20         7.79        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.83 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        14.99        15.95         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84        22.78        21.17        21.14         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.82        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              2.73               0.07 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             91.73             127.56 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             16.80               9.86 
[1] "2.7 - 91.7 (16.8)" "0.1 - 127.6 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"11Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"11Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"11Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D22V2, continuous
D22V3, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED     3  10
  11Q GAIN WILD-TYPE 215 325
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      3   10
  11Q GAIN WILD-TYPE  215  325
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE                3                215
  MALE                 10                325
D22V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  11Q GAIN MUTATED                               0                   1
  11Q GAIN WILD-TYPE                            10                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  11Q GAIN MUTATED                                12
  11Q GAIN WILD-TYPE                             513
D22V5, multiclass
                                 clus
vv                                11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            1                 17
  UNTREATED PRIMARY (DE NOVO) GBM               12                513
D22V6, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED    11   2
  11Q GAIN WILD-TYPE 371 169
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     11    2
  11Q GAIN WILD-TYPE  371  169
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                11                371
  YES                2                169

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED    10  46
  12P GAIN WILD-TYPE  98 399
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                56                497 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                46                399 
$`12P GAIN MUTATED`
TCGA-02-0001 TCGA-02-0024 TCGA-02-0051 TCGA-02-0054 TCGA-02-0070 TCGA-02-0074 
        9.14        53.06        15.06         6.54        25.05        10.19 
TCGA-02-0087 TCGA-02-0266 TCGA-02-0271 TCGA-02-0324 TCGA-06-0146 TCGA-06-0151 
       57.76        17.69        14.47         7.69        20.09        46.59 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0184 TCGA-06-0187 TCGA-06-0192 TCGA-06-0216 
        2.56        56.84        40.37        26.33        18.28        22.49 
TCGA-06-0409 TCGA-06-0649 TCGA-06-0743 TCGA-06-0877 TCGA-06-1086 TCGA-06-1087 
       70.52         2.04        22.29         5.65         6.35         3.58 
TCGA-06-2561 TCGA-06-5415 TCGA-06-6389 TCGA-06-6694 TCGA-08-0246 TCGA-08-0516 
        9.27         8.55         7.76         7.36         3.91        18.44 
TCGA-12-0691 TCGA-12-0776 TCGA-12-0778 TCGA-12-1090 TCGA-12-1098 TCGA-12-1598 
        6.08         9.11        14.83         6.21         3.98         9.44 
TCGA-14-0740 TCGA-14-0790 TCGA-14-1396 TCGA-14-1453 TCGA-14-1821 TCGA-14-1823 
       11.97        13.74         1.12         1.15        17.75        17.82 
TCGA-14-2554 TCGA-15-1449 TCGA-16-1460 TCGA-19-1787 TCGA-27-1838 TCGA-28-1756 
       17.49         5.49         6.41        12.66        11.51         2.83 
TCGA-28-2506 TCGA-28-5207 TCGA-28-5218 TCGA-32-1979 TCGA-32-2615 TCGA-32-4208 
        6.74         9.04         4.21        19.50        15.95        21.14 
TCGA-32-5222 TCGA-74-6577 
       10.62         4.31 

$`12P GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.55        20.61        55.86        77.62        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
       12.59         2.50        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 
       19.73        26.43        28.70         5.49        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 
       89.72        22.72         0.23        51.29         8.81        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        9.86        10.62         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 
        9.21         2.20        11.74         2.33        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        7.82        19.46        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
        5.46         9.44        11.80        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        90.97 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0188 
        1.97        53.98        19.00         2.53        73.84        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       14.93        10.29         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       12.43         0.33        18.02        10.32        11.80        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 
       14.96        10.29         5.52         0.26         4.67         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        0.16        35.01        12.33         3.22         4.47         9.63 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       23.57         9.37        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92        43.46        46.19         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        5.42        20.94         7.43        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 
       13.58        33.90         1.08         0.76         4.90         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.98         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 
        3.91         5.36         1.45         0.49         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        4.77         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       11.77         8.52        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        6.51        15.98        17.29         5.52        14.01        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
        1.61        10.39         5.95         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       38.17        25.97        24.13         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0780 TCGA-12-0818 
       12.43        53.10        43.10         5.49        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1092 
        8.91        20.58       127.56         5.82        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 
       11.97        11.38        15.85         9.11        14.53         3.39 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        3.22         2.01        15.09         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        0.79         1.38         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        7.10        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2555 
        0.99         1.94         7.63         5.88         7.13         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
        3.75         3.39         9.86        50.53        19.10        53.19 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91         9.93        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        3.48         7.13         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 
       33.14        21.30        30.05        14.04        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        1.18         1.51         0.13         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        5.26         3.91        15.55        14.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       14.20         7.79        13.64         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1980 
       15.35        21.07         0.49         0.10        15.85         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 
       14.99         7.33         8.84        22.78        21.17         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       12.59        19.82        10.85         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        7.73         3.45        20.88        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              1.12               0.07 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             70.52             127.56 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            10.405              9.900 
[1] "1.1 - 70.5 (10.4)" "0.1 - 127.6 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-87-5896 
"12P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-87-5896 
"12P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-87-5896 
"12P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D23V2, continuous
D23V3, binary
                    cls
clus                   0   1
  12P GAIN MUTATED    24  32
  12P GAIN WILD-TYPE 194 303
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     24   32
  12P GAIN WILD-TYPE  194  303
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               24                194
  MALE                 32                303
D23V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  12P GAIN MUTATED                               1                   1
  12P GAIN WILD-TYPE                             9                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  12P GAIN MUTATED                                54
  12P GAIN WILD-TYPE                             471
D23V5, multiclass
                                 clus
vv                                12P GAIN MUTATED 12P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            1                 17
  UNTREATED PRIMARY (DE NOVO) GBM               54                471
D23V6, binary
                    cls
clus                   0   1
  12P GAIN MUTATED    40  16
  12P GAIN WILD-TYPE 342 155
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     40   16
  12P GAIN WILD-TYPE  342  155
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                40                342
  YES               16                155

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED     8  37
  12Q GAIN WILD-TYPE 100 408
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                45                508 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                37                408 
$`12Q GAIN MUTATED`
TCGA-02-0001 TCGA-02-0051 TCGA-02-0054 TCGA-02-0060 TCGA-02-0070 TCGA-02-0074 
        9.14        15.06         6.54         6.02        25.05        10.19 
TCGA-02-0087 TCGA-02-0271 TCGA-02-0324 TCGA-06-0151 TCGA-06-0164 TCGA-06-0192 
       57.76        14.47         7.69        46.59        56.84        18.28 
TCGA-06-0216 TCGA-06-0409 TCGA-06-0743 TCGA-06-0877 TCGA-06-1086 TCGA-06-1087 
       22.49        70.52        22.29         5.65         6.35         3.58 
TCGA-06-2561 TCGA-06-5415 TCGA-06-6391 TCGA-06-6694 TCGA-08-0246 TCGA-12-0691 
        9.27         8.55         1.45         7.36         3.91         6.08 
TCGA-12-0778 TCGA-12-1090 TCGA-12-1098 TCGA-14-0790 TCGA-14-1396 TCGA-14-1453 
       14.83         6.21         3.98        13.74         1.12         1.15 
TCGA-14-1821 TCGA-14-1823 TCGA-14-2554 TCGA-15-1449 TCGA-19-1786 TCGA-19-1787 
       17.75        17.82        17.49         5.49         7.13        12.66 
TCGA-27-1838 TCGA-28-2506 TCGA-28-5207 TCGA-28-5218 TCGA-32-1979 TCGA-32-2615 
       11.51         6.74         9.04         4.21        19.50        15.95 
TCGA-32-4208 TCGA-32-5222 TCGA-74-6577 
       21.14        10.62         4.31 

$`12Q GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
        3.19        12.59         2.50        19.86         8.35         9.57 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 
       19.73        26.43        28.70         5.49        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 
       89.72        22.72         0.23        51.29         8.81        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       17.69        10.75         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
       12.23         9.86        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 
       16.70         9.80         7.82        19.46        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
        8.65         3.19         5.46         9.44        11.80         2.56 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        90.97         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        73.84        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.29         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
        0.33        18.02        10.32        11.80        20.42        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
       10.29         5.52         0.26         4.67         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       23.57         9.37        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92        43.46        46.19         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        5.42        20.94         7.43        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 
       13.58        33.90         1.08         0.76         4.90         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.98         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 
        3.91         7.76         5.36         0.49         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        4.77         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       11.77         8.52        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.40         1.61        10.39         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        25.97        24.13         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       30.54        21.63        11.97        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
       14.53         3.39         9.44        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.52        11.74        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 
        3.75        32.02        58.78        23.11         7.10        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        7.63         5.88         7.13         7.96         3.75         3.39 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0848 
        9.86        50.53        19.10        53.19         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.31         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        9.07         5.95        12.95         4.64        25.38         3.48 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       30.05        14.04        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.17         8.32         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        2.83         0.13         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        3.91        15.55        14.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
        7.79        13.64         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1980 TCGA-32-1982 
       21.07         0.49         0.10        15.85         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 
        7.33         8.84        22.78        21.17         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       19.82        10.85         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
        3.45        20.88        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              1.12               0.07 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             70.52             127.56 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              9.27               9.98 
[1] "1.1 - 70.5 (9.3)"   "0.1 - 127.6 (10.0)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"12Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"12Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"12Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
D24V3, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED    21  24
  12Q GAIN WILD-TYPE 197 311
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     21   24
  12Q GAIN WILD-TYPE  197  311
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE               21                197
  MALE                 24                311
D24V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  12Q GAIN MUTATED                               1                   0
  12Q GAIN WILD-TYPE                             9                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  12Q GAIN MUTATED                                44
  12Q GAIN WILD-TYPE                             481
D24V5, multiclass
                                 clus
vv                                12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            0                 18
  UNTREATED PRIMARY (DE NOVO) GBM               44                481
D24V6, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED    32  13
  12Q GAIN WILD-TYPE 350 158
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     32   13
  12Q GAIN WILD-TYPE  350  158
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                32                350
  YES               13                158

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED     2   9
  13Q GAIN WILD-TYPE 106 436
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                11                542 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 9                436 
$`13Q GAIN MUTATED`
TCGA-02-0001 TCGA-02-0281 TCGA-06-1087 TCGA-08-0386 TCGA-14-0817 TCGA-14-0871 
        9.14         3.98         3.58        15.72         5.39        28.90 
TCGA-19-1390 TCGA-26-5136 TCGA-28-1752 TCGA-28-5207 TCGA-32-2615 
       25.38         1.22         8.45         9.04        15.95 

$`13Q GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       17.69        10.75        14.47        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        90.97 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       18.02        10.32        11.80        20.42        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58        33.90         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43        31.50        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.12         4.54         3.91 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.76         5.36         1.45         0.49         7.36         8.28 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 
       12.85         4.77         1.55         4.77         4.96        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       34.75         3.91       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
        9.17        10.85         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        3.48        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       14.01        14.40         1.61        10.39         5.95         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        3.25         1.35         2.89        16.50        26.33         2.04 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
        7.96         3.75         3.39         9.86        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       53.19         5.49         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
       12.95         4.64         3.48         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        16.47         7.00         7.04         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.64         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        5.39         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        8.84         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.72        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        8.32         7.59         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.66         6.74         4.77         7.30         5.26         3.91 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55        14.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       14.99         7.33         8.84        22.78        21.17        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        19.82        10.85        10.62         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        20.88         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              1.22               0.07 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             28.90             127.56 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              9.04              10.11 
[1] "1.2 - 28.9 (9.0)"   "0.1 - 127.6 (10.1)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"13Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
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        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
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        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
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        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
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        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
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        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
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        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
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        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
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        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"13Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"13Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D25V2, continuous
D25V3, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED     7   4
  13Q GAIN WILD-TYPE 211 331
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      7    4
  13Q GAIN WILD-TYPE  211  331
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                7                211
  MALE                  4                331
D25V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  13Q GAIN MUTATED                               0                   0
  13Q GAIN WILD-TYPE                            10                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  13Q GAIN MUTATED                                11
  13Q GAIN WILD-TYPE                             514
D25V5, multiclass
                                 clus
vv                                13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            0                 18
  UNTREATED PRIMARY (DE NOVO) GBM               11                514
D25V6, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED     6   5
  13Q GAIN WILD-TYPE 376 166
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      6    5
  13Q GAIN WILD-TYPE  376  166
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 6                376
  YES                5                166

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED     1  17
  14Q GAIN WILD-TYPE 107 428
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                18                535 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                17                428 
$`14Q GAIN MUTATED`
TCGA-02-0059 TCGA-02-0075 TCGA-02-0102 TCGA-06-0151 TCGA-06-0177 TCGA-06-0195 
        9.57        20.84        26.99        46.59         1.97         7.04 
TCGA-06-1087 TCGA-06-2569 TCGA-08-0246 TCGA-08-0510 TCGA-08-0514 TCGA-12-0776 
        3.58         0.43         3.91         3.48         8.52         9.11 
TCGA-12-3646 TCGA-14-0867 TCGA-16-0846 TCGA-19-2620 TCGA-32-2495 TCGA-32-2632 
       43.20         2.04         3.91         4.87        14.99         8.84 

$`14Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
       19.86         8.35         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        10.19        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.15        92.61        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 
       16.70         9.80         7.82        19.46        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
        8.65         3.19         5.46         9.44        11.80         2.56 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.84        10.65         5.29        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 
        0.23         2.20         2.73        90.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        73.84        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.29        18.28         4.67         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       22.49         0.33        18.02        10.32        11.80        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       14.96        10.29         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        8.05         0.16        35.01        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        7.43         6.35        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       33.90         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
       30.64         5.95         6.81         5.98         4.37        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68        34.75       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        0.56        11.77        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.40         1.61        10.39         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 
       25.28        13.61         6.38        59.41        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.01        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.74         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
        2.89        16.50        26.33        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.12        12.43         0.99         1.94        17.75        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.39         9.86        50.53        19.10        53.19         5.49 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55        14.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
       15.95         7.33        22.78        21.17        21.14         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.82        10.85        10.62         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        20.88         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.43               0.07 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             46.59             127.56 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              7.78              10.29 
[1] "0.4 - 46.6 (7.8)"   "0.1 - 127.6 (10.3)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"14Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
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        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
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        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
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        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
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        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"14Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"14Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D26V2, continuous
D26V3, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED     7  11
  14Q GAIN WILD-TYPE 211 324
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      7   11
  14Q GAIN WILD-TYPE  211  324
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE                7                211
  MALE                 11                324
D26V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  14Q GAIN MUTATED                               1                   2
  14Q GAIN WILD-TYPE                             9                  16
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  14Q GAIN MUTATED                                15
  14Q GAIN WILD-TYPE                             510
D26V5, multiclass
                                 clus
vv                                14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            2                 16
  UNTREATED PRIMARY (DE NOVO) GBM               15                510
D26V6, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED    11   7
  14Q GAIN WILD-TYPE 371 164
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     11    7
  14Q GAIN WILD-TYPE  371  164
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                11                371
  YES                7                164

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED     3  21
  15Q GAIN WILD-TYPE 105 424
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                24                529 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                21                424 
$`15Q GAIN MUTATED`
TCGA-02-0051 TCGA-02-0055 TCGA-02-0075 TCGA-02-0106 TCGA-02-0456 TCGA-02-2466 
       15.06         2.50        20.84        11.67         3.35        16.80 
TCGA-06-0130 TCGA-06-0151 TCGA-06-0166 TCGA-06-0177 TCGA-06-1087 TCGA-08-0392 
       10.52        46.59         5.29         1.97         3.58         0.30 
TCGA-12-0818 TCGA-12-0826 TCGA-14-0812 TCGA-14-1823 TCGA-14-3477 TCGA-27-2521 
       91.73        27.78         3.25        17.82         3.75        10.39 
TCGA-28-2509 TCGA-28-5218 TCGA-32-2615 TCGA-41-2575 TCGA-41-4097 TCGA-76-4934 
        4.77         4.21        15.95         9.53         0.20         2.53 

$`15Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 
       14.70         3.19        12.59         6.54        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        5.49        10.19        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.29         8.81        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       65.00        17.65        23.15        92.61        99.95        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.90        17.69        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.69        10.62         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       11.34         9.24        16.18        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       16.18         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        3.55        22.72        32.48        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 
       11.80         2.56        56.84        10.65        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 
       13.02         0.23         2.20         2.73        90.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       19.00         2.53        40.37        73.84        26.33        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       14.93        10.29        18.28         4.67         7.04         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
        0.20        12.43        22.49         0.33        18.02        10.32 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       11.80        20.42        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       70.52         4.67         8.05         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 
        5.42        20.94         7.43         6.35        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58        33.90         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.12         4.54         3.91         7.76         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.45         0.49         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        1.55         4.77         4.96        22.68        34.75         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
       15.72         3.19        10.59         0.56         3.48        11.77 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        8.52        18.44        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        6.51        15.98        17.29         5.52        14.01        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
        1.61        10.39         5.95         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.83        14.27        24.76        18.48        10.62        23.51 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.91        20.58       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       30.54        21.63        11.97        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       14.53         3.98         3.39         9.44        25.28        13.61 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.38        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.09        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       11.24        13.74         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.94        17.75         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.13        17.49         7.96         3.39         9.86        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        5.95        12.95         4.64        25.38         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        16.47         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        1.78         6.51         5.39         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 
        1.51         2.83         0.13         0.66         6.74         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 
        9.80        14.20         7.79        13.64         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.35        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.83        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        14.99         7.33         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.17        21.14         3.68        12.59        19.82        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 
       10.62         0.85        13.35         8.94         0.99         4.44 
TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
       11.84        11.54         7.73         3.45        20.88         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        3.65         9.14        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.20               0.07 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             91.73             127.56 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              7.41              10.03 
[1] "0.2 - 91.7 (7.4)"   "0.1 - 127.6 (10.0)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
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        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
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        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
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        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
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        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
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        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
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        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
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        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
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        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
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        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
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        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
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        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
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        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
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        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
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        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
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        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
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        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
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        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
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        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
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        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
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        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
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        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
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        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
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        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
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        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
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        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
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        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
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        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
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        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
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        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
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        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
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        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
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        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
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        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
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        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"15Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"15Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D27V2, continuous
D27V3, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED    10  14
  15Q GAIN WILD-TYPE 208 321
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     10   14
  15Q GAIN WILD-TYPE  208  321
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE               10                208
  MALE                 14                321
D27V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  15Q GAIN MUTATED                               1                   1
  15Q GAIN WILD-TYPE                             9                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  15Q GAIN MUTATED                                22
  15Q GAIN WILD-TYPE                             503
D27V5, multiclass
                                 clus
vv                                15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            1                 17
  UNTREATED PRIMARY (DE NOVO) GBM               22                503
D27V6, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED    12  12
  15Q GAIN WILD-TYPE 370 159
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     12   12
  15Q GAIN WILD-TYPE  370  159
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                12                370
  YES               12                159

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED     7  30
  16P GAIN WILD-TYPE 101 415
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                37                516 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                30                415 
$`16P GAIN MUTATED`
TCGA-02-0001 TCGA-02-0051 TCGA-02-0069 TCGA-02-0075 TCGA-02-0079 TCGA-02-0106 
        9.14        15.06        28.70        20.84        27.22        11.67 
TCGA-02-0113 TCGA-06-0128 TCGA-06-0166 TCGA-06-0188 TCGA-06-0197 TCGA-06-0237 
       92.61        22.72         5.29        28.47         2.60        10.32 
TCGA-06-0409 TCGA-06-1086 TCGA-06-2558 TCGA-06-2567 TCGA-08-0245 TCGA-08-0510 
       70.52         6.35         0.76         4.37        34.75         3.48 
TCGA-08-0516 TCGA-12-0692 TCGA-12-0821 TCGA-12-0827 TCGA-12-1088 TCGA-12-1598 
       18.44         2.63        10.62        38.76       127.56         9.44 
TCGA-12-1602 TCGA-12-3646 TCGA-14-1454 TCGA-14-3477 TCGA-15-1447 TCGA-15-1449 
        6.38        43.20        30.15         3.75        53.19         5.49 
TCGA-16-0850 TCGA-19-1388 TCGA-27-1832 TCGA-28-2506 TCGA-28-2509 TCGA-28-5207 
       16.31        12.95         9.86         6.74         4.77         9.04 
TCGA-41-2573 
        8.94 

$`16P GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
        3.19        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        9.57         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       10.19        89.72        22.72         0.23        51.29         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 
       57.76        16.93         3.48        26.99        65.00        17.65 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.15        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 
       11.80         2.56        56.84        10.65        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        90.97         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 
       14.93        10.29        18.28         4.67         7.04         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 
       12.43        22.49         0.33        18.02        11.80        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 
       14.96        10.29         5.52         0.26         4.67         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        0.16        35.01        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.14         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58        33.90 
TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        1.08         4.90         9.27         2.83        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        6.81         5.98         0.43        31.50        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.12         4.54         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.36         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 
        4.77         1.55         4.77         4.96        22.68         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 
       15.72         3.19        10.59         0.30         0.56        11.77 
TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
        8.52        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       10.39         5.95         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       25.97        24.13         6.08        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.10        43.10         5.49         9.11        14.83        14.27 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 
       91.73        24.76        18.48        23.51        27.78         8.91 
TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
       20.58         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       25.28        13.61        59.41        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.09        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       23.11         7.10         1.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.94        17.75        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 
        5.88         7.13        17.49         7.96         3.39         9.86 
TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 
       50.53        19.10         3.91         9.93        26.07         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
       13.97         6.41        11.77        21.86         8.61         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 
       14.27         3.39        10.75         9.07         5.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.48         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       18.25        33.14        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 
        0.66         7.30         5.26         3.91        15.55        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.33         8.84        22.78        21.17        21.14         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.82        10.85        10.62         0.85        13.35 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.76               0.07 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            127.56             108.82 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             10.62               9.88 
[1] "0.8 - 127.6 (10.6)" "0.1 - 108.8 (9.9)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-87-5896 
"16P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-87-5896 
"16P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-87-5896 
"16P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D28V2, continuous
D28V3, binary
                    cls
clus                   0   1
  16P GAIN MUTATED    19  18
  16P GAIN WILD-TYPE 199 317
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     19   18
  16P GAIN WILD-TYPE  199  317
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE               19                199
  MALE                 18                317
D28V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  16P GAIN MUTATED                               0                   1
  16P GAIN WILD-TYPE                            10                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  16P GAIN MUTATED                                36
  16P GAIN WILD-TYPE                             489
D28V5, multiclass
                                 clus
vv                                16P GAIN MUTATED 16P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            1                 17
  UNTREATED PRIMARY (DE NOVO) GBM               36                489
D28V6, binary
                    cls
clus                   0   1
  16P GAIN MUTATED    31   6
  16P GAIN WILD-TYPE 351 165
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     31    6
  16P GAIN WILD-TYPE  351  165
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                31                351
  YES                6                165

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED     7  29
  16Q GAIN WILD-TYPE 101 416
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                36                517 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                29                416 
$`16Q GAIN MUTATED`
TCGA-02-0001 TCGA-02-0051 TCGA-02-0069 TCGA-02-0075 TCGA-02-0079 TCGA-02-0106 
        9.14        15.06        28.70        20.84        27.22        11.67 
TCGA-02-0113 TCGA-06-0128 TCGA-06-0166 TCGA-06-0188 TCGA-06-0197 TCGA-06-0237 
       92.61        22.72         5.29        28.47         2.60        10.32 
TCGA-06-0409 TCGA-06-0410 TCGA-06-1086 TCGA-06-2558 TCGA-06-2567 TCGA-08-0245 
       70.52         4.67         6.35         0.76         4.37        34.75 
TCGA-08-0510 TCGA-08-0516 TCGA-12-0821 TCGA-12-0827 TCGA-12-1598 TCGA-12-3646 
        3.48        18.44        10.62        38.76         9.44        43.20 
TCGA-14-1454 TCGA-14-1821 TCGA-14-3477 TCGA-15-1447 TCGA-15-1449 TCGA-16-0850 
       30.15        17.75         3.75        53.19         5.49        16.31 
TCGA-19-1388 TCGA-19-2620 TCGA-28-2506 TCGA-28-2509 TCGA-28-5207 TCGA-41-2573 
       12.95         4.87         6.74         4.77         9.04         8.94 

$`16Q GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
        3.19        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        9.57         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       10.19        89.72        22.72         0.23        51.29         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 
       57.76        16.93         3.48        26.99        65.00        17.65 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.15        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 
       11.80         2.56        56.84        10.65        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        90.97         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 
       14.93        10.29        18.28         4.67         7.04         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 
       12.43        22.49         0.33        18.02        11.80        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 
       14.96        10.29         5.52         0.26         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 
       22.98         5.85         5.42        20.94         7.43         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58        33.90         1.08 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83        30.64         5.95         6.81 
TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        5.98         0.43        31.50        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.12         4.54         3.91         7.76         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.45         0.49         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 
        1.55         4.77         4.96        22.68         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 
        3.19        10.59         0.30         0.56        11.77         8.52 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
        5.95         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.10        43.10         5.49         9.11        14.83        14.27 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 
       91.73        24.76        18.48        23.51        27.78         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 
        3.39        25.28        13.61         6.38        59.41        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        5.39         2.89        16.50        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 
       32.02        58.78        23.11         7.10         1.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 
       40.93         6.12        12.43         0.99         1.94        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 
        7.63         5.88         7.13        17.49         7.96         3.39 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
        9.86        50.53        19.10         3.91         9.93        26.07 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        4.64        25.38         3.48         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        0.13         9.67         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.72        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.32         7.59         8.45         1.18         1.51         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 
        0.13         0.66         7.30         5.26         3.91        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84        22.78        21.17        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        19.82        10.85        10.62         0.85 
TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
       13.35         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        20.88         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              0.76               0.07 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             92.61             127.56 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            11.145              9.860 
[1] "0.8 - 92.6 (11.1)" "0.1 - 127.6 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"16Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
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        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
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        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
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        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
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        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"16Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"16Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D29V2, continuous
D29V3, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED    17  19
  16Q GAIN WILD-TYPE 201 316
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     17   19
  16Q GAIN WILD-TYPE  201  316
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE               17                201
  MALE                 19                316
D29V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  16Q GAIN MUTATED                               0                   1
  16Q GAIN WILD-TYPE                            10                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  16Q GAIN MUTATED                                35
  16Q GAIN WILD-TYPE                             490
D29V5, multiclass
                                 clus
vv                                16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            1                 17
  UNTREATED PRIMARY (DE NOVO) GBM               35                490
D29V6, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED    30   6
  16Q GAIN WILD-TYPE 352 165
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     30    6
  16Q GAIN WILD-TYPE  352  165
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                30                352
  YES                6                165

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED     6  35
  17P GAIN WILD-TYPE 102 410
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                41                512 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                35                410 
$`17P GAIN MUTATED`
TCGA-02-0003 TCGA-02-0266 TCGA-02-0281 TCGA-02-0325 TCGA-02-0456 TCGA-02-2466 
        4.73        17.69         3.98        10.62         3.35        16.80 
TCGA-06-0151 TCGA-06-0166 TCGA-06-0173 TCGA-06-0195 TCGA-06-0216 TCGA-06-0409 
       46.59         5.29         0.23         7.04        22.49        70.52 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-1087 TCGA-06-1801 TCGA-06-6694 
        9.37        22.29        19.53         3.58         8.65         7.36 
TCGA-08-0510 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-1096 TCGA-12-1600 
        3.48        10.62        23.51        38.76         9.11        13.61 
TCGA-12-1602 TCGA-12-5301 TCGA-14-0813 TCGA-14-1794 TCGA-14-3477 TCGA-16-0849 
        6.38         2.01         1.35         0.99         3.75        26.07 
TCGA-19-1388 TCGA-19-1390 TCGA-27-2521 TCGA-28-1746 TCGA-28-2506 TCGA-28-5207 
       12.95        25.38        10.39         0.20         6.74         9.04 
TCGA-28-5218 TCGA-32-2615 TCGA-32-4210 TCGA-41-2575 TCGA-41-4097 
        4.21        15.95         3.68         9.53         0.20 

$`17P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        9.14        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        9.86         7.69         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       11.34         9.24        16.18        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       16.18         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.55        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 
        9.44        11.80         2.56        56.84        10.65        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
        3.12        13.02         2.20         2.73        90.97         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 
       28.47        14.93        10.29        18.28         4.67         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
        0.20        12.43         0.33        18.02        10.32        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 
       20.42        14.96        10.29         5.52         0.26         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        8.05         0.16        35.01        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.63         2.04        23.57         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
        5.85         5.42        20.94         7.43         6.35        26.79 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58        33.90         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.12         4.54         3.91         7.76         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        1.45         0.49         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 
        3.19        10.59         0.30         0.56        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       18.44        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       10.39         5.95         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0826 TCGA-12-0828 
       14.27        91.73        24.76        18.48        27.78         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.97        11.38        15.85        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
        9.44        25.28        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.09        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       11.24        13.74         3.25         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
       12.43         1.94        17.75        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.13        17.49         7.96         3.39         9.86        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0850 
       19.10        53.19         5.49         3.91         9.93        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
        4.64         3.48         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.72        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       14.40        15.75         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 
        4.77         7.30         5.26         3.91        15.55        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 
       11.77         9.80        14.20         7.79        13.64         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.83 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 
       16.93        12.23        20.78        14.99         7.33         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       22.78        21.17        21.14        12.59        19.82        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 
       10.62         0.85        13.35         8.94         0.99         4.44 
TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
       11.84        11.54         7.73         3.45        20.88         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.20               0.07 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             70.52             127.56 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              9.04              10.29 
[1] "0.2 - 70.5 (9.0)"   "0.1 - 127.6 (10.3)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "17P GAIN MUTATED"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-87-5896 
"17P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "17P GAIN MUTATED"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-87-5896 
"17P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "17P GAIN MUTATED"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-87-5896 
"17P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D30V2, continuous
D30V3, binary
                    cls
clus                   0   1
  17P GAIN MUTATED    13  28
  17P GAIN WILD-TYPE 205 307
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     13   28
  17P GAIN WILD-TYPE  205  307
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE               13                205
  MALE                 28                307
D30V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  17P GAIN MUTATED                               1                   1
  17P GAIN WILD-TYPE                             9                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  17P GAIN MUTATED                                39
  17P GAIN WILD-TYPE                             486
D30V5, multiclass
                                 clus
vv                                17P GAIN MUTATED 17P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            1                 17
  UNTREATED PRIMARY (DE NOVO) GBM               39                486
D30V6, binary
                    cls
clus                   0   1
  17P GAIN MUTATED    26  15
  17P GAIN WILD-TYPE 356 156
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     26   15
  17P GAIN WILD-TYPE  356  156
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                26                356
  YES               15                156

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED     5  48
  17Q GAIN WILD-TYPE 103 397
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                53                500 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                48                397 
$`17Q GAIN MUTATED`
TCGA-02-0003 TCGA-02-0266 TCGA-02-0281 TCGA-02-0325 TCGA-02-0456 TCGA-02-2466 
        4.73        17.69         3.98        10.62         3.35        16.80 
TCGA-06-0151 TCGA-06-0166 TCGA-06-0173 TCGA-06-0188 TCGA-06-0195 TCGA-06-0216 
       46.59         5.29         0.23        28.47         7.04        22.49 
TCGA-06-0237 TCGA-06-0409 TCGA-06-0410 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
       10.32        70.52         4.67         9.37        22.29        19.53 
TCGA-06-1087 TCGA-06-1801 TCGA-06-6694 TCGA-08-0510 TCGA-12-0619 TCGA-12-0821 
        3.58         8.65         7.36         3.48        10.39        10.62 
TCGA-12-0822 TCGA-12-0827 TCGA-12-1092 TCGA-12-1096 TCGA-12-1600 TCGA-12-1602 
       23.51        38.76        21.63         9.11        13.61         6.38 
TCGA-12-5301 TCGA-14-0813 TCGA-14-1794 TCGA-14-3477 TCGA-15-1449 TCGA-16-0846 
        2.01         1.35         0.99         3.75         5.49         3.91 
TCGA-19-1388 TCGA-19-1390 TCGA-27-1835 TCGA-27-2521 TCGA-28-1746 TCGA-28-2506 
       12.95        25.38        21.30        10.39         0.20         6.74 
TCGA-28-5207 TCGA-28-5215 TCGA-28-5218 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
        9.04         7.79         4.21        14.99        15.95         7.33 
TCGA-32-4210 TCGA-41-2575 TCGA-41-3915 TCGA-41-4097 TCGA-76-6280 
        3.68         9.53        11.84         0.20        11.38 

$`17Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        9.14        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        9.86         7.69         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       11.34         9.24        16.18        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       16.18         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.55        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 
        9.44        11.80         2.56        56.84        10.65        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
        3.12        13.02         2.20         2.73        90.97         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 
       14.93        10.29        18.28         4.67         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       12.43         0.33        18.02        11.80        20.42        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
       10.29         5.52         0.26         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        7.43         6.35        26.79         7.86        13.58        33.90 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 
        3.91         7.76         5.36         1.45         0.49         8.28 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 
       12.85         4.77         1.55         4.77         4.96        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       34.75         3.91       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        0.56        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.01        14.40         1.61         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       27.78         8.91        20.58       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1098 
       30.54        11.97        11.38        15.85        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
        3.39         9.44        25.28        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        3.22        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.74         3.25         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
        6.12        12.43         1.94        17.75        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 
        5.88         7.13        17.49         7.96         3.39         9.86 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       50.53        19.10        53.19         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
        4.64         3.48         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
        9.86        18.25        33.14        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       24.72        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
       15.75         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 
        1.18         1.51         2.83         0.13         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        7.30         5.26         3.91        15.55        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
        9.80        14.20        13.64         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.35        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.83        16.93        12.23 
TCGA-32-2494 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       20.78         8.84        22.78        21.17        21.14        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.82        10.85        10.62         0.85        13.35         8.94 
TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        0.99         4.44        11.54         7.73         3.45        20.88 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.31        14.33         8.22         7.46         4.77         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.14         2.53        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        3.29         2.70        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.20               0.07 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             70.52             127.56 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              9.11              10.24 
[1] "0.2 - 70.5 (9.1)"   "0.1 - 127.6 (10.2)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"17Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
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        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"17Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
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        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
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        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
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        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
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        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
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        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
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        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"17Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D31V2, continuous
D31V3, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED    19  34
  17Q GAIN WILD-TYPE 199 301
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     19   34
  17Q GAIN WILD-TYPE  199  301
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE               19                199
  MALE                 34                301
D31V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  17Q GAIN MUTATED                               1                   2
  17Q GAIN WILD-TYPE                             9                  16
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  17Q GAIN MUTATED                                50
  17Q GAIN WILD-TYPE                             475
D31V5, multiclass
                                 clus
vv                                17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            2                 16
  UNTREATED PRIMARY (DE NOVO) GBM               50                475
D31V6, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED    34  19
  17Q GAIN WILD-TYPE 348 152
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     34   19
  17Q GAIN WILD-TYPE  348  152
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                34                348
  YES               19                152

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    10  40
  18P GAIN WILD-TYPE  98 405
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                50                503 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                40                405 
$`18P GAIN MUTATED`
TCGA-02-0025 TCGA-02-0074 TCGA-02-0104 TCGA-02-0266 TCGA-02-0271 TCGA-02-0281 
       42.74        10.19        65.00        17.69        14.47         3.98 
TCGA-02-0325 TCGA-06-0128 TCGA-06-0147 TCGA-06-0188 TCGA-06-0197 TCGA-06-0209 
       10.62        22.72        16.70        28.47         2.60         3.88 
TCGA-06-0238 TCGA-06-0402 TCGA-06-0686 TCGA-06-1087 TCGA-06-1805 TCGA-06-2559 
       11.80         0.26         9.37         3.58        33.90         4.90 
TCGA-06-5858 TCGA-06-6698 TCGA-08-0353 TCGA-12-0657 TCGA-12-0827 TCGA-12-1090 
        6.12         4.77         6.41         0.10        38.76         6.21 
TCGA-12-1092 TCGA-12-1598 TCGA-12-1602 TCGA-12-3651 TCGA-12-5295 TCGA-14-0867 
       21.63         9.44         6.38        11.77        13.08         2.04 
TCGA-14-0871 TCGA-14-1794 TCGA-14-1823 TCGA-15-1447 TCGA-15-1449 TCGA-19-0960 
       28.90         0.99        17.82        53.19         5.49         8.61 
TCGA-19-1392 TCGA-19-1787 TCGA-19-2629 TCGA-26-5136 TCGA-27-2521 TCGA-28-2506 
        3.48        12.66        16.47         1.22        10.39         6.74 
TCGA-28-2509 TCGA-32-1973 TCGA-32-1986 TCGA-32-2632 TCGA-32-5222 TCGA-41-2573 
        4.77        21.07        12.69         8.84        10.62         8.94 
TCGA-41-3915 TCGA-76-4934 
       11.84         2.53 

$`18P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       53.06        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       26.99        11.67        17.65        23.15        92.61        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0285 
       15.65        48.95        16.54        16.90        10.75        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 
       14.20        15.95        12.23         9.86         7.69         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       20.09         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        90.97         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 
       14.93        10.29        18.28         4.67         7.04         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        6.44         5.46         4.96        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0240 TCGA-06-0241 
       22.49         0.33        18.02        10.32        20.42        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
       10.29         5.52        70.52         4.67         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       23.57        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
        5.85         5.42        20.94         7.43         6.35        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 
        8.65         7.86        13.58         1.08         0.76         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83        30.64         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43        31.50        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        7.36         8.28        12.85         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.56         3.48        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        5.52        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
        7.17        65.88        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 
       18.48        10.62        23.51        27.78         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
      127.56         5.82        30.54        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         3.98         3.39        25.28        13.61 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
       59.41        43.20        25.78        11.54        10.95        34.52 
TCGA-12-3653 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       11.74         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.18        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 
        1.35         5.39         2.89        16.50        26.33        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 
       40.93         6.12        12.43         1.94        17.75         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.13        17.49         7.96         3.75         3.39 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
        9.86        50.53        19.10         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 
       12.95         4.64        25.38         7.13         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 
        9.37         9.40        14.86         5.49         8.84         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 
        1.18         1.51         2.83         0.13         0.66         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
        9.80        14.20         7.79        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
       10.49         5.42        15.35         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        14.83        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 
       20.78        14.99        15.95         7.33        22.78        21.17 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 
       21.14         3.68        12.59        19.82        10.85         0.85 
TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 
       13.35         9.53         0.99         4.44         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.10               0.07 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             65.00             127.56 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             9.815              9.930 
[1] "0.1 - 65.0 (9.8)"  "0.1 - 127.6 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-87-5896 
"18P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-87-5896 
"18P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-87-5896 
"18P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D32V2, continuous
D32V3, binary
                    cls
clus                   0   1
  18P GAIN MUTATED    20  30
  18P GAIN WILD-TYPE 198 305
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     20   30
  18P GAIN WILD-TYPE  198  305
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE               20                198
  MALE                 30                305
D32V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  18P GAIN MUTATED                               0                   0
  18P GAIN WILD-TYPE                            10                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  18P GAIN MUTATED                                50
  18P GAIN WILD-TYPE                             475
D32V5, multiclass
                                 clus
vv                                18P GAIN MUTATED 18P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            0                 18
  UNTREATED PRIMARY (DE NOVO) GBM               50                475
D32V6, binary
                    cls
clus                   0   1
  18P GAIN MUTATED    36  14
  18P GAIN WILD-TYPE 346 157
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     36   14
  18P GAIN WILD-TYPE  346  157
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                36                346
  YES               14                157

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    11  39
  18Q GAIN WILD-TYPE  97 406
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                50                503 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                39                406 
$`18Q GAIN MUTATED`
TCGA-02-0074 TCGA-02-0104 TCGA-02-0266 TCGA-02-0271 TCGA-02-0281 TCGA-02-0325 
       10.19        65.00        17.69        14.47         3.98        10.62 
TCGA-06-0128 TCGA-06-0147 TCGA-06-0188 TCGA-06-0197 TCGA-06-0209 TCGA-06-0238 
       22.72        16.70        28.47         2.60         3.88        11.80 
TCGA-06-0402 TCGA-06-0686 TCGA-06-0876 TCGA-06-1087 TCGA-06-1805 TCGA-06-5408 
        0.26         9.37        46.19         3.58        33.90        11.21 
TCGA-06-5858 TCGA-06-6698 TCGA-08-0353 TCGA-12-0657 TCGA-12-0827 TCGA-12-1092 
        6.12         4.77         6.41         0.10        38.76        21.63 
TCGA-12-1598 TCGA-12-1602 TCGA-12-3651 TCGA-12-5295 TCGA-14-0867 TCGA-14-0871 
        9.44         6.38        11.77        13.08         2.04        28.90 
TCGA-14-1794 TCGA-14-1823 TCGA-15-1447 TCGA-15-1449 TCGA-16-0850 TCGA-19-0960 
        0.99        17.82        53.19         5.49        16.31         8.61 
TCGA-19-1392 TCGA-19-1787 TCGA-19-2629 TCGA-26-5136 TCGA-27-2521 TCGA-28-2506 
        3.48        12.66        16.47         1.22        10.39         6.74 
TCGA-28-2509 TCGA-32-1986 TCGA-32-2632 TCGA-32-5222 TCGA-41-2573 TCGA-41-2575 
        4.77        12.69         8.84        10.62         8.94         9.53 
TCGA-41-3915 TCGA-76-4934 
       11.84         2.53 

$`18Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       28.70        25.05         5.49        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
        3.48        26.99        11.67        17.65        23.15        92.61 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 
       99.95        15.65        48.95        16.54        16.90        10.75 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        0.16        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.18         3.35        16.80        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       16.18         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        3.55        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
        2.33        20.09         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        90.97 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        73.84 
TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       26.33        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        0.39         6.44         5.46         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0240 
       12.43        22.49         0.33        18.02        10.32        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       14.96        10.29         5.52        70.52         4.67         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        0.16        35.01        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        2.04        23.57        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        2.14         0.92        43.46         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
        5.85         5.42        20.94         7.43         6.35        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        8.65         7.86        13.58         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        4.37         0.43        31.50         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        7.36         8.28        12.85         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.56         3.48        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        5.52        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
        7.17        65.88        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 
       18.48        10.62        23.51        27.78         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
      127.56         5.82         6.21        30.54        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 
       15.85         9.11        14.53         3.98         3.39        25.28 
TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       13.61        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       34.52        11.74         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 
        0.92        40.93         6.12        12.43         1.94        17.75 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 TCGA-16-0848 
        3.39         9.86        50.53        19.10         3.91         9.93 
TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       26.07         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 
       12.95         4.64        25.38         7.13         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 
        9.37         9.40        14.86         5.49         8.84         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 
        1.18         1.51         2.83         0.13         0.66         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
        9.80        14.20         7.79        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1987 TCGA-32-1991 
       15.85        19.50         1.18         4.67        14.83        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 
       12.23        20.78        14.99        15.95         7.33        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.17        21.14         3.68        12.59        19.82        10.85 
TCGA-41-2571 TCGA-41-2572 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 
        0.85        13.35         0.99         4.44         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.10               0.07 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             65.00             127.56 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             10.29               9.90 
[1] "0.1 - 65.0 (10.3)" "0.1 - 127.6 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
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        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
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        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
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        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
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        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
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        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
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        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
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        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
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        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
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        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
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        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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        TCGA-87-5896 
"18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"18Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"18Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D33V2, continuous
D33V3, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED    23  27
  18Q GAIN WILD-TYPE 195 308
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED     23   27
  18Q GAIN WILD-TYPE  195  308
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE               23                195
  MALE                 27                308
D33V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  18Q GAIN MUTATED                               0                   0
  18Q GAIN WILD-TYPE                            10                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  18Q GAIN MUTATED                                50
  18Q GAIN WILD-TYPE                             475
D33V5, multiclass
                                 clus
vv                                18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            0                 18
  UNTREATED PRIMARY (DE NOVO) GBM               50                475
D33V6, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED    37  13
  18Q GAIN WILD-TYPE 345 158
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED     37   13
  18Q GAIN WILD-TYPE  345  158
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                37                345
  YES               13                158

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    42 166
  19P GAIN WILD-TYPE  66 279
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
               208                345 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
               166                279 
$`19P GAIN MUTATED`
TCGA-02-0007 TCGA-02-0009 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       23.18        10.59        20.61        55.86        77.62        20.12 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0051 TCGA-02-0057 TCGA-02-0064 
        3.58        10.72        18.28        15.06        19.86        19.73 
TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0102 
       26.43        25.05         5.49        10.19        20.84        26.99 
TCGA-02-0106 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       11.67        23.15        92.61        99.95        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 
       16.54        16.90        17.69        10.75        13.87        14.20 
TCGA-02-0290 TCGA-02-0333 TCGA-02-0430 TCGA-02-2466 TCGA-02-2485 TCGA-06-0119 
       15.95         4.37        10.55        16.80        15.42         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0137 
        0.26         4.04        47.31         0.10         3.55        23.05 
TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
        2.33        16.70         9.80        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0164 TCGA-06-0173 
       12.79         8.65         3.19         5.46        56.84         0.23 
TCGA-06-0174 TCGA-06-0177 TCGA-06-0179 TCGA-06-0185 TCGA-06-0190 TCGA-06-0192 
        2.20         1.97        19.00        73.84        10.29        18.28 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0211 TCGA-06-0216 
        0.39         6.44         5.46         3.88        11.84        22.49 
TCGA-06-0221 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0645 TCGA-06-0650 
       18.02        10.29         0.26        70.52         3.22        23.57 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 TCGA-06-0877 TCGA-06-0879 TCGA-06-1086 
       22.29        19.53         2.70         5.65        22.98         6.35 
TCGA-06-1802 TCGA-06-2563 TCGA-06-2565 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        7.86        30.64         6.81         8.98         8.55         6.71 
TCGA-06-6388 TCGA-06-6695 TCGA-06-6699 TCGA-08-0246 TCGA-08-0347 TCGA-08-0352 
        3.91         8.28         1.55         3.91        13.78         1.28 
TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0375 TCGA-08-0386 
        6.41        22.52        14.70        35.64         9.17        15.72 
TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0518 TCGA-08-0524 
       10.59         0.56         3.48         8.52         1.28         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 
       15.98        17.29         5.52         0.10        25.97        24.13 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0780 TCGA-12-0819 
       18.08        28.37        12.43        53.10        14.27        24.76 
TCGA-12-0826 TCGA-12-0829 TCGA-12-1094 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
       27.78        20.58        11.38         3.39         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
       13.61         6.38        25.78        11.54        10.95        34.52 
TCGA-14-0783 TCGA-14-0789 TCGA-14-0790 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 
        6.18        11.24        13.74         5.39        26.33         2.04 
TCGA-14-1034 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1454 TCGA-14-1823 
       15.95        32.02        58.78         7.10        30.15        17.82 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-1446 TCGA-15-1449 
        7.13        17.49         7.96         3.39        19.10         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-1055 TCGA-16-1056 TCGA-16-1062 TCGA-19-0955 
        3.91         9.93         9.90        13.35        18.28        11.77 
TCGA-19-1386 TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 
        9.07        12.95        25.38         3.48         7.13         3.25 
TCGA-19-2629 TCGA-19-5950 TCGA-19-5951 TCGA-19-5953 TCGA-19-5955 TCGA-19-5958 
       16.47        11.28         8.02         4.73         1.78         5.39 
TCGA-19-5959 TCGA-26-1799 TCGA-26-5139 TCGA-27-1833 TCGA-27-2518 TCGA-27-2521 
        5.29         9.37         1.58        18.25        24.72        10.39 
TCGA-27-2524 TCGA-27-2528 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        7.59        15.75         9.17         7.59         8.45         1.18 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5208 TCGA-28-5209 
        0.66         6.74         7.30         5.26        15.55        14.53 
TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
       14.20        13.64         4.21         5.42        15.35         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1987 TCGA-32-2495 TCGA-32-2632 
       15.85        19.50         4.67        14.83        14.99         8.84 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-5222 TCGA-41-2572 TCGA-41-3393 
       21.17        21.14        12.59        10.62        13.35         4.44 
TCGA-41-3915 TCGA-41-5651 TCGA-74-6578 TCGA-76-4934 TCGA-76-6280 TCGA-76-6656 
       11.84        11.54        14.33         2.53        11.38         4.83 
TCGA-76-6661 TCGA-76-6663 TCGA-76-6664 TCGA-81-5911 
        0.23         7.69         7.76        17.69 

$`19P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
        9.14         4.73        18.35        35.41        20.71        82.55 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0039 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 
       14.14        10.52         6.84        14.70         3.19        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0069 
        6.54         2.50         8.35         9.57         6.02        28.70 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       27.22        89.72        22.72         0.23        51.29         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0104 TCGA-02-0107 TCGA-02-0271 
       57.76        16.93         3.48        65.00        17.65        14.47 
TCGA-02-0281 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
        3.98        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       15.91        25.71        25.12        10.59        12.39        14.50 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 
       47.11        11.34         9.24        16.18         3.35        12.92 
TCGA-02-2483 TCGA-02-2486 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
       15.29        16.18        22.72        32.48        10.52        18.74 
TCGA-06-0133 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       14.07        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0146 TCGA-06-0149 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
       11.74        20.09         7.82         9.44        11.80         2.56 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0175 
       10.65         5.29        19.04         3.12        13.02         2.73 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0182 TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 
       90.97        53.98         2.53        40.37        26.33        28.47 
TCGA-06-0189 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0210 TCGA-06-0213 
       14.93         4.67         7.04         2.60         4.96         0.20 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       12.43         0.33        10.32        11.80        20.42        14.96 
TCGA-06-0397 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
        5.52         4.67         8.05         0.16        35.01        12.33 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0686 TCGA-06-0745 TCGA-06-0749 
        4.47         9.63         2.04         9.37         5.36         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 
        0.92        43.46        46.19         7.17         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 
       20.94         7.43         3.58        26.79         8.65        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       33.90         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95         5.98         4.37         0.43        31.50        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5418 TCGA-06-5856 
        3.52         8.35         4.54         8.81         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        6.12         4.54         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6697 TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 
        7.36        12.85         4.77         4.77         4.96        22.68 
TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 TCGA-08-0349 
       34.75       108.82         1.74         4.34        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0354 TCGA-08-0358 TCGA-08-0359 TCGA-08-0380 
        3.39        53.79        15.06        19.50         0.95        10.85 
TCGA-08-0389 TCGA-08-0392 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 
        3.19         0.30        11.77        18.44        58.19        10.72 
TCGA-08-0521 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        4.80        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0662 TCGA-12-0691 TCGA-12-0692 TCGA-12-0773 
        7.17        65.88        38.17         6.08         2.63        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 
        5.49         9.11        14.83        91.73        18.48        10.62 
TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       23.51        38.76         8.91       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       30.54        21.63        11.97        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-3644 TCGA-12-3646 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 
        3.98        59.41        43.20        11.77        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
        3.22         2.01        15.09        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 TCGA-14-0871 
        2.24         3.25         1.35         2.89        16.50        28.90 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1451 
       19.30         0.79         1.38         1.12         3.75        23.11 
TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
        1.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-3477 TCGA-15-0742 
        1.94        17.75         7.63         5.88         3.75         9.86 
TCGA-15-1444 TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
       50.53        53.19        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1060 TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 
        0.82         3.65        13.97         6.41        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1387 TCGA-19-1389 
        0.43        14.27         3.39        10.75         5.95         4.64 
TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
       12.66         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5952 
        0.16         4.08         7.00         7.04         6.64        18.64 
TCGA-19-5954 TCGA-19-5956 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        7.96         6.51         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       31.33         7.10         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.22         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2519 
       33.14        21.30        30.05        14.04        11.51        10.39 
TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-28-1746 TCGA-28-1747 TCGA-28-1750 
       16.08         2.86        14.40         0.20         2.53         8.32 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2509 TCGA-28-5204 TCGA-28-5207 
        1.51         2.83         0.13         4.77         3.91         9.04 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 TCGA-28-5219 TCGA-28-5220 TCGA-32-1973 
       11.77         9.80         7.79         8.52        10.49        21.07 
TCGA-32-1976 TCGA-32-1980 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        0.49         1.18        12.69        16.93        12.23        20.78 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-4210 TCGA-32-4213 TCGA-32-4719 
       15.95         7.33        22.78         3.68        19.82        10.85 
TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-4097 TCGA-41-6646 
        0.85         8.94         9.53         0.99         0.20         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
        3.45        20.88         4.31         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         3.65         9.14        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 
        3.29         2.70        17.06         8.32        20.94         5.03 
TCGA-76-6662 TCGA-81-5910 TCGA-87-5896 
        9.24         1.61         0.07 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.10               0.07 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             99.95             127.56 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             11.46               9.21 
[1] "0.1 - 100.0 (11.5)" "0.1 - 127.6 (9.2)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-87-5896 
"19P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-87-5896 
"19P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-87-5896 
"19P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D34V2, continuous
D34V3, binary
                    cls
clus                   0   1
  19P GAIN MUTATED    83 125
  19P GAIN WILD-TYPE 135 210
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED     83  125
  19P GAIN WILD-TYPE  135  210
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE               83                135
  MALE                125                210
D34V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  19P GAIN MUTATED                               3                  10
  19P GAIN WILD-TYPE                             7                   8
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  19P GAIN MUTATED                               195
  19P GAIN WILD-TYPE                             330
D34V5, multiclass
                                 clus
vv                                19P GAIN MUTATED 19P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  3                  7
  TREATED PRIMARY GBM                           10                  8
  UNTREATED PRIMARY (DE NOVO) GBM              195                330
D34V6, binary
                    cls
clus                   0   1
  19P GAIN MUTATED   147  61
  19P GAIN WILD-TYPE 235 110
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED    147   61
  19P GAIN WILD-TYPE  235  110
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO               147                235
  YES               61                110

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    36 146
  19Q GAIN WILD-TYPE  72 299
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               182                371 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               146                299 
$`19Q GAIN MUTATED`
TCGA-02-0009 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0037 
       10.59        20.61        55.86        77.62        20.12         3.58 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0051 TCGA-02-0057 TCGA-02-0064 TCGA-02-0068 
       10.72        18.28        15.06        19.86        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0102 TCGA-02-0106 
       25.05         5.49        10.19        20.84        26.99        11.67 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 
       23.15        92.61        15.65        48.95        16.90        17.69 
TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0333 TCGA-02-0430 
       10.75        13.87        14.20        15.95         4.37        10.55 
TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
       15.42         2.70         0.26        47.31         0.10         3.55 
TCGA-06-0137 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 
       23.05         2.33        16.70         9.80        19.46        46.59 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0164 TCGA-06-0173 TCGA-06-0174 
        8.65         3.19         5.46        56.84         0.23         2.20 
TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0190 TCGA-06-0192 
        1.97        19.00         2.53        73.84        10.29        18.28 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0211 TCGA-06-0216 
        0.39         6.44         5.46         3.88        11.84        22.49 
TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0645 TCGA-06-0650 TCGA-06-0743 
       10.29         0.26        70.52         3.22        23.57        22.29 
TCGA-06-0744 TCGA-06-0877 TCGA-06-0879 TCGA-06-1086 TCGA-06-1802 TCGA-06-2563 
       19.53         5.65        22.98         6.35         7.86        30.64 
TCGA-06-2565 TCGA-06-5414 TCGA-06-5415 TCGA-06-6388 TCGA-06-6695 TCGA-08-0246 
        6.81         8.98         8.55         3.91         8.28         3.91 
TCGA-08-0347 TCGA-08-0352 TCGA-08-0355 TCGA-08-0356 TCGA-08-0375 TCGA-08-0386 
       13.78         1.28        22.52        14.70         9.17        15.72 
TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0518 TCGA-08-0524 
       10.59         0.56         3.48         8.52         1.28         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 
       15.98        17.29         5.52         0.10        25.97        24.13 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0778 TCGA-12-0780 
       18.08        28.37        12.43        53.10        14.83        14.27 
TCGA-12-0819 TCGA-12-0829 TCGA-12-1094 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 
       24.76        20.58        11.38         3.39        25.28        13.61 
TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-14-0789 
        6.38        25.78        11.54        10.95        34.52        11.24 
TCGA-14-0790 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1402 
       13.74         5.39        26.33         2.04        15.95        32.02 
TCGA-14-1450 TCGA-14-1454 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       58.78        30.15        17.82         7.13        17.49         7.96 
TCGA-14-3477 TCGA-15-1446 TCGA-16-0846 TCGA-16-0848 TCGA-16-1055 TCGA-16-1062 
        3.75        19.10         3.91         9.93         9.90        18.28 
TCGA-19-0955 TCGA-19-1386 TCGA-19-1388 TCGA-19-1390 TCGA-19-1786 TCGA-19-1789 
       11.77         9.07        12.95        25.38         7.13         3.25 
TCGA-19-2620 TCGA-19-5950 TCGA-19-5953 TCGA-19-5955 TCGA-26-1799 TCGA-26-5139 
        4.87        11.28         4.73         1.78         9.37         1.58 
TCGA-27-1833 TCGA-27-2518 TCGA-27-2521 TCGA-27-2524 TCGA-27-2528 TCGA-28-1749 
       18.25        24.72        10.39         7.59        15.75         9.17 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 
        7.59         8.45         1.18         6.74         7.30         5.26 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-28-6450 
       15.55        14.53        14.20        13.64         4.21         5.42 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-2495 TCGA-32-2632 
        0.10        15.85        19.50         4.67        14.99         8.84 
TCGA-32-2638 TCGA-32-5222 TCGA-41-2572 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 
       21.17        10.62        13.35         4.44        11.84        11.54 
TCGA-74-6578 TCGA-76-4934 TCGA-76-6280 TCGA-76-6656 TCGA-76-6661 TCGA-76-6663 
       14.33         2.53        11.38         4.83         0.23         7.69 
TCGA-76-6664 TCGA-81-5911 
        7.76        17.69 

$`19Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 
        9.14         4.73        18.35        23.18        35.41        20.71 
TCGA-02-0014 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
       82.55        53.06        42.74        24.59        10.36        90.58 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0039 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
        2.83        14.14        10.52         6.84        14.70         3.19 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
       12.59         6.54         2.50         8.35         9.57         6.02 
TCGA-02-0069 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       28.70        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0104 TCGA-02-0107 
        8.81        57.76        16.93         3.48        65.00        17.65 
TCGA-02-0114 TCGA-02-0258 TCGA-02-0271 TCGA-02-0281 TCGA-02-0317 TCGA-02-0321 
       99.95        16.54        14.47         3.98        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 
        7.69        10.62         0.16        15.91        25.71        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       10.59        12.39        14.50        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 
       16.18         3.35        16.80        12.92        15.29        16.18 
TCGA-06-0124 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        4.04        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0146 TCGA-06-0149 TCGA-06-0152 TCGA-06-0154 TCGA-06-0159 TCGA-06-0160 
       20.09         7.82        11.80        12.79         9.44        11.80 
TCGA-06-0162 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        2.56        10.65         5.29        19.04         3.12        13.02 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 
        2.73        90.97        53.98        40.37        26.33        28.47 
TCGA-06-0189 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0210 TCGA-06-0213 
       14.93         4.67         7.04         2.60         4.96         0.20 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       12.43         0.33        18.02        10.32        11.80        20.42 
TCGA-06-0241 TCGA-06-0397 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
       14.96         5.52         4.67         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0686 TCGA-06-0745 
       12.33         4.47         9.63         2.04         9.37         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 
        2.70         2.14         0.92        43.46        46.19         7.17 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 
        5.85         5.42        20.94         7.43         3.58        26.79 
TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        8.65        13.58        33.90         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
        9.27         2.83         5.95         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6389 
        6.71         2.73         3.75         6.12         4.54         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6697 TCGA-06-6698 
        5.36         1.45         0.49         7.36        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 
        1.55         4.77         4.96        22.68        34.75       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        1.74         4.34        10.39         7.59         3.39        53.79 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0380 
        6.41        15.06        35.64        19.50         0.95        10.85 
TCGA-08-0389 TCGA-08-0392 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 
        3.19         0.30        11.77        18.44        58.19        10.72 
TCGA-08-0521 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        4.80        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0662 TCGA-12-0691 TCGA-12-0692 TCGA-12-0773 
        7.17        65.88        38.17         6.08         2.63        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
        5.49         9.11        91.73        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       27.78        38.76         8.91       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       30.54        21.63        11.97        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1598 TCGA-12-3644 TCGA-12-3646 TCGA-12-3651 TCGA-12-3653 
        3.98         9.44        59.41        43.20        11.77        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 
        6.18        23.05         2.24         3.25         1.35         2.89 
TCGA-14-0865 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       16.50        28.90        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 
        3.75        23.11         7.10         1.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 
        6.12        12.43         0.99         1.94        17.75         7.63 
TCGA-14-1827 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1447 TCGA-15-1449 
        5.88         3.39         9.86        50.53        53.19         5.49 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1056 
       26.07        16.31         4.27        29.00         0.82        13.35 
TCGA-16-1060 TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
        3.65        13.97         6.41        21.86         8.61         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1387 TCGA-19-1389 TCGA-19-1392 
       14.27         3.39        10.75         5.95         4.64         3.48 
TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
       12.66         0.13         9.67         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5951 
        4.08        16.47         7.00         7.04         6.64         8.02 
TCGA-19-5952 TCGA-19-5954 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
       18.64         7.96         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-5132 
       10.03        13.87         9.73        31.33         7.10         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-6173 TCGA-26-6174 
       14.86         5.49         8.84         1.22         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
        4.80        16.57         9.86        33.14        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2519 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       14.04        11.51        10.39        16.08         2.86        14.40 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1750 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        0.20         2.53         8.32         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2509 TCGA-28-5204 TCGA-28-5207 TCGA-28-5211 TCGA-28-5213 
        0.66         4.77         3.91         9.04        11.77         9.80 
TCGA-28-5215 TCGA-28-5219 TCGA-28-5220 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        7.79         8.52        10.49        15.35        21.07         0.49 
TCGA-32-1980 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
       15.95         7.33        22.78        21.14         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       19.82        10.85         0.85         8.94         9.53         0.99 
TCGA-41-4097 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6581 
        0.20         7.73         3.45        20.88         4.31         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       10.78        16.67         3.29         2.70        17.06         8.32 
TCGA-76-6286 TCGA-76-6657 TCGA-76-6662 TCGA-81-5910 TCGA-87-5896 
       20.94         5.03         9.24         1.61         0.07 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.10               0.07 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             92.61             127.56 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             11.38               9.24 
[1] "0.1 - 92.6 (11.4)" "0.1 - 127.6 (9.2)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-87-5896 
"19Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-87-5896 
"19Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-87-5896 
"19Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D35V2, continuous
D35V3, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED    72 110
  19Q GAIN WILD-TYPE 146 225
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     72  110
  19Q GAIN WILD-TYPE  146  225
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE               72                146
  MALE                110                225
D35V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  19Q GAIN MUTATED                               3                   7
  19Q GAIN WILD-TYPE                             7                  11
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  19Q GAIN MUTATED                               172
  19Q GAIN WILD-TYPE                             353
D35V5, multiclass
                                 clus
vv                                19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  3                  7
  TREATED PRIMARY GBM                            7                 11
  UNTREATED PRIMARY (DE NOVO) GBM              172                353
D35V6, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED   126  56
  19Q GAIN WILD-TYPE 256 115
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED    126   56
  19Q GAIN WILD-TYPE  256  115
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO               126                256
  YES               56                115

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED    35 174
  20P GAIN WILD-TYPE  73 271
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               209                344 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               174                271 
$`20P GAIN MUTATED`
TCGA-02-0006 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0025 TCGA-02-0034 
       18.35        20.61        55.86        77.62        42.74        14.14 
TCGA-02-0037 TCGA-02-0043 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0068 
        3.58        18.28         6.54         2.50        19.86        26.43 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0083 TCGA-02-0084 TCGA-02-0086 TCGA-02-0089 
       10.19        20.84        22.72         0.23         8.81        16.93 
TCGA-02-0106 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       11.67        23.15        92.61        15.65        48.95        16.54 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0333 
       17.69        10.75        13.87        14.20        15.95         4.37 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 TCGA-06-0119 TCGA-06-0122 TCGA-06-0125 
        3.35        16.80        15.29         2.70         0.26        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0137 TCGA-06-0147 
        0.10         3.55        22.72        10.52        23.05        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.80         7.82        19.46        46.59        11.80        12.79 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0164 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
        3.19         5.46        56.84         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 
        2.20         2.73        90.97         1.97        19.00         2.53 
TCGA-06-0185 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0206 TCGA-06-0209 
       73.84        14.93        18.28         7.04         6.44         3.88 
TCGA-06-0211 TCGA-06-0216 TCGA-06-0237 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       11.84        22.49        10.32         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0645 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 TCGA-06-0877 
        4.67         3.22        22.29         5.36         2.70         5.65 
TCGA-06-0882 TCGA-06-1087 TCGA-06-1802 TCGA-06-2557 TCGA-06-2562 TCGA-06-2563 
        5.42         3.58         7.86         1.08         2.83        30.64 
TCGA-06-2565 TCGA-06-2569 TCGA-06-5414 TCGA-06-5415 TCGA-06-5856 TCGA-06-6388 
        6.81         0.43         8.98         8.55         3.75         3.91 
TCGA-06-6390 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-08-0246 TCGA-08-0352 
        5.36         8.28        12.85         4.77         3.91         1.28 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0375 TCGA-08-0510 TCGA-08-0514 
       22.52        14.70        35.64         9.17         3.48         8.52 
TCGA-08-0516 TCGA-08-0518 TCGA-08-0529 TCGA-08-0531 TCGA-12-0656 TCGA-12-0670 
       18.44         1.28        17.29         5.52        65.88        25.97 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0778 TCGA-12-0780 
       24.13         2.63        18.08        28.37        14.83        14.27 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0826 TCGA-12-0827 TCGA-12-0829 TCGA-12-1093 
       24.76        18.48        27.78        38.76        20.58        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1600 TCGA-12-1602 TCGA-12-3646 TCGA-12-3648 
       11.38        15.85        13.61         6.38        43.20        25.78 
TCGA-12-3649 TCGA-12-3652 TCGA-14-0740 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       11.54        34.52        11.97         6.18        23.05         2.24 
TCGA-14-0790 TCGA-14-0817 TCGA-14-0866 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 
       13.74         5.39        26.33        28.90         0.79         1.38 
TCGA-14-1402 TCGA-14-1452 TCGA-14-1453 TCGA-14-1823 TCGA-14-2554 TCGA-14-2555 
       32.02         7.10         1.15        17.82        17.49         7.96 
TCGA-15-0742 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0861 TCGA-16-1060 
        9.86        53.19         5.49         3.91         4.27         3.65 
TCGA-16-1062 TCGA-19-0955 TCGA-19-1386 TCGA-19-1388 TCGA-19-1392 TCGA-19-1786 
       18.28        11.77         9.07        12.95         3.48         7.13 
TCGA-19-1789 TCGA-19-2631 TCGA-19-5950 TCGA-19-5951 TCGA-19-5954 TCGA-19-5958 
        3.25         7.00        11.28         8.02         7.96         5.39 
TCGA-19-5959 TCGA-26-1440 TCGA-26-1799 TCGA-26-6173 TCGA-27-1833 TCGA-27-1834 
        5.29         9.73         9.37         7.92        18.25        33.14 
TCGA-27-1835 TCGA-27-2519 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       21.30        10.39        16.08         2.86        14.40        15.75 
TCGA-28-1749 TCGA-28-1751 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5215 
        9.17         7.59         6.74         4.77         7.30         7.79 
TCGA-28-5218 TCGA-28-6450 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
        4.21         5.42         0.10        15.85        19.50         1.18 
TCGA-32-2491 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       12.23        14.99        15.95         8.84        22.78        21.17 
TCGA-32-4210 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 TCGA-41-3393 
        3.68        10.62         0.85        13.35         9.53         4.44 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6575 TCGA-74-6581 TCGA-76-4925 TCGA-76-4929 
       11.54         7.73        20.88         8.22         4.77         3.65 
TCGA-76-6280 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6664 
       11.38         4.83         5.03         0.23         7.76 

$`20P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        9.14         4.73        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0023 TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
       82.55        20.12        53.06        24.59        10.36        90.58 
TCGA-02-0033 TCGA-02-0038 TCGA-02-0039 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
        2.83        10.72        10.52         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
       15.06        12.59         8.35         9.57         6.02        19.73 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0079 TCGA-02-0080 TCGA-02-0085 
       28.70        25.05         5.49        27.22        89.72        51.29 
TCGA-02-0087 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0114 
       57.76         3.48        26.99        65.00        17.65        99.95 
TCGA-02-0260 TCGA-02-0271 TCGA-02-0281 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       16.90        14.47         3.98        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 
       10.62         0.16        15.91        25.71        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0124 TCGA-06-0129 
       16.18        12.92        15.42        16.18         4.04        32.48 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       18.74        14.07        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0155 TCGA-06-0159 
        2.20        11.74         2.33        20.09         8.65         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0178 
       11.80         2.56        10.65         5.29        19.04        53.98 
TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 TCGA-06-0190 TCGA-06-0194 TCGA-06-0197 
       40.37        26.33        28.47        10.29         4.67         2.60 
TCGA-06-0201 TCGA-06-0208 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 
        0.39         5.46         4.96         0.20        12.43         0.33 
TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0412 
       18.02        11.80        20.42        14.96        10.29         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        0.16        35.01        12.33         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       23.57         9.37        19.53         2.14         0.92        43.46 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0939 TCGA-06-1084 
       46.19         7.17        22.98         5.85        20.94         7.43 
TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 
        6.35        26.79         8.65        13.58        33.90         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
        4.90         9.27         5.95         5.98         4.37        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5416 
       11.21         3.52         8.35         4.54         8.81         6.71 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 
        2.73         6.12         4.54         7.76         1.45         0.49 
TCGA-06-6694 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        7.36         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 TCGA-08-0354 TCGA-08-0358 TCGA-08-0359 
        3.39        53.79         6.41        15.06        19.50         0.95 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0512 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       11.77        58.19        10.72         4.80         6.51        15.98 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       14.01        14.40         1.61        10.39         5.95         7.17 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0691 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        0.10        38.17         6.08        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0818 TCGA-12-0821 TCGA-12-0822 TCGA-12-0828 
        5.49         9.11        91.73        10.62        23.51         8.91 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1096 
      127.56         5.82         6.21        30.54        21.63         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-3644 
       14.53         3.98         3.39         9.44        25.28        59.41 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        11.77        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0789 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 
       15.09         0.95        11.24         3.25         1.35         2.89 
TCGA-14-0865 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1396 TCGA-14-1401 
       16.50         2.04        15.95        19.30         1.12         3.75 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       58.78        23.11        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.94        17.75         7.63         5.88 
TCGA-14-1829 TCGA-14-3477 TCGA-14-4157 TCGA-15-1444 TCGA-15-1446 TCGA-16-0848 
        7.13         3.75         3.39        50.53        19.10         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       26.07        16.31        29.00         0.82         9.90        13.35 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
       13.97         6.41        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1787 
        3.39        10.75         5.95         4.64        25.38        12.66 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-4065 TCGA-19-5947 TCGA-19-5952 TCGA-19-5953 
        4.08        16.47         7.04         6.64        18.64         4.73 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1442 
        1.78         6.51         5.42        10.03        13.87        31.33 
TCGA-26-1443 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        7.10         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1836 
        1.58         2.30         4.80        16.57         9.86        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2521 TCGA-27-2524 TCGA-28-1746 
       14.04        11.51        24.72        10.39         7.59         0.20 
TCGA-28-1747 TCGA-28-1750 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        2.53         8.32         8.45         1.18         1.51         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        0.13         0.66         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5219 
       14.53        11.77         9.80        14.20        13.64         8.52 
TCGA-28-5220 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1982 TCGA-32-1986 
       10.49        15.35        21.07         0.49         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 TCGA-32-2616 TCGA-32-4208 TCGA-32-4211 
       14.83        16.93        20.78         7.33        21.14        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-41-2573 TCGA-41-3392 TCGA-41-3915 TCGA-41-4097 
       19.82        10.85         8.94         0.99        11.84         0.20 
TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 
        3.45         4.31        14.33         7.46         4.54         3.09 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6662 TCGA-76-6663 TCGA-81-5910 
       17.06         8.32        20.94         9.24         7.69         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.10               0.07 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             92.61             127.56 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             10.32               9.88 
[1] "0.1 - 92.6 (10.3)" "0.1 - 127.6 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-87-5896 
"20P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-87-5896 
"20P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-87-5896 
"20P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D36V2, continuous
D36V3, binary
                    cls
clus                   0   1
  20P GAIN MUTATED    88 121
  20P GAIN WILD-TYPE 130 214
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     88  121
  20P GAIN WILD-TYPE  130  214
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               88                130
  MALE                121                214
D36V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  20P GAIN MUTATED                               3                   9
  20P GAIN WILD-TYPE                             7                   9
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  20P GAIN MUTATED                               197
  20P GAIN WILD-TYPE                             328
D36V5, multiclass
                                 clus
vv                                20P GAIN MUTATED 20P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  3                  7
  TREATED PRIMARY GBM                            9                  9
  UNTREATED PRIMARY (DE NOVO) GBM              197                328
D36V6, binary
                    cls
clus                   0   1
  20P GAIN MUTATED   147  62
  20P GAIN WILD-TYPE 235 109
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED    147   62
  20P GAIN WILD-TYPE  235  109
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO               147                235
  YES               62                109

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED    37 170
  20Q GAIN WILD-TYPE  71 275
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               207                346 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               170                275 
$`20Q GAIN MUTATED`
TCGA-02-0006 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0025 TCGA-02-0034 
       18.35        20.61        55.86        77.62        42.74        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.58        10.72        18.28         6.54         2.50        19.86 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 
       26.43        28.70        10.19        20.84        27.22        22.72 
TCGA-02-0084 TCGA-02-0086 TCGA-02-0089 TCGA-02-0106 TCGA-02-0111 TCGA-02-0113 
        0.23         8.81        16.93        11.67        23.15        92.61 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0266 TCGA-02-0269 TCGA-02-0285 
       15.65        48.95        16.54        17.69        10.75        13.87 
TCGA-02-0289 TCGA-02-0333 TCGA-02-0456 TCGA-02-2466 TCGA-06-0119 TCGA-06-0122 
       14.20         4.37         3.35        16.80         2.70         0.26 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0137 
       47.31         0.10         3.55        22.72        10.52        23.05 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0157 TCGA-06-0158 TCGA-06-0164 TCGA-06-0169 TCGA-06-0171 
       12.79         3.19         5.46        56.84         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0179 
        0.23         2.20         2.73        90.97         1.97        19.00 
TCGA-06-0182 TCGA-06-0185 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0206 
        2.53        73.84        14.93        18.28         7.04         6.44 
TCGA-06-0209 TCGA-06-0211 TCGA-06-0216 TCGA-06-0237 TCGA-06-0394 TCGA-06-0397 
        3.88        11.84        22.49        10.32        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0645 TCGA-06-0743 TCGA-06-0745 
        0.26        70.52         4.67         3.22        22.29         5.36 
TCGA-06-0747 TCGA-06-0877 TCGA-06-0879 TCGA-06-0882 TCGA-06-1087 TCGA-06-1802 
        2.70         5.65        22.98         5.42         3.58         7.86 
TCGA-06-2557 TCGA-06-2562 TCGA-06-2563 TCGA-06-2565 TCGA-06-2569 TCGA-06-5414 
        1.08         2.83        30.64         6.81         0.43         8.98 
TCGA-06-5415 TCGA-06-5856 TCGA-06-6388 TCGA-06-6390 TCGA-06-6695 TCGA-06-6697 
        8.55         3.75         3.91         5.36         8.28        12.85 
TCGA-06-6698 TCGA-08-0246 TCGA-08-0352 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        4.77         3.91         1.28        22.52        14.70        35.64 
TCGA-08-0375 TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0529 
        9.17         3.48         8.52        18.44         1.28        17.29 
TCGA-08-0531 TCGA-12-0656 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        5.52        65.88        25.97        24.13         2.63        18.08 
TCGA-12-0707 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0826 TCGA-12-0829 
       28.37        14.27        24.76        18.48        27.78        20.58 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1600 TCGA-12-1602 TCGA-12-3646 TCGA-12-3648 
       11.97        11.38        13.61         6.38        43.20        25.78 
TCGA-12-3649 TCGA-12-3652 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 
       11.54        34.52         6.18        23.05         2.24        13.74 
TCGA-14-0817 TCGA-14-0866 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1402 
        5.39        26.33        28.90         0.79         1.38        32.02 
TCGA-14-1452 TCGA-14-1823 TCGA-14-2554 TCGA-14-2555 TCGA-15-0742 TCGA-15-1447 
        7.10        17.82        17.49         7.96         9.86        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-1060 TCGA-19-0955 TCGA-19-0960 TCGA-19-1386 
        5.49         3.91         3.65        11.77         8.61         9.07 
TCGA-19-1388 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-2631 TCGA-19-5950 
       12.95         3.48         7.13         3.25         7.00        11.28 
TCGA-19-5951 TCGA-19-5954 TCGA-19-5958 TCGA-19-5959 TCGA-26-1440 TCGA-26-1799 
        8.02         7.96         5.39         5.29         9.73         9.37 
TCGA-26-6173 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-2519 TCGA-27-2521 
        7.92        18.25        33.14        21.30        10.39        10.39 
TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1749 TCGA-28-1751 
       16.08         2.86        14.40        15.75         9.17         7.59 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 
        6.74         4.77         7.30        14.20         7.79         4.21 
TCGA-28-6450 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-2491 
        5.42         0.10        15.85        19.50         1.18        12.23 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-5222 
       14.99        15.95         8.84        22.78        21.17        10.62 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 
        0.85        13.35         9.53         4.44        11.54         7.73 
TCGA-74-6575 TCGA-74-6581 TCGA-76-4925 TCGA-76-4929 TCGA-76-6280 TCGA-76-6656 
       20.88         8.22         4.77         3.65        11.38         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6664 
        5.03         0.23         7.76 

$`20Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        9.14         4.73        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0023 TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
       82.55        20.12        53.06        24.59        10.36        90.58 
TCGA-02-0033 TCGA-02-0039 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
        2.83        10.52         6.84        14.70         3.19        15.06 
TCGA-02-0052 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0070 
       12.59         8.35         9.57         6.02        19.73        25.05 
TCGA-02-0071 TCGA-02-0080 TCGA-02-0085 TCGA-02-0087 TCGA-02-0099 TCGA-02-0102 
        5.49        89.72        51.29        57.76         3.48        26.99 
TCGA-02-0104 TCGA-02-0107 TCGA-02-0114 TCGA-02-0260 TCGA-02-0271 TCGA-02-0281 
       65.00        17.65        99.95        16.90        14.47         3.98 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       15.91        25.71        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 
       10.55        47.11        11.34         9.24        16.18        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0124 TCGA-06-0129 TCGA-06-0132 
       15.29        15.42        16.18         4.04        32.48        18.74 
TCGA-06-0133 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       14.07        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0155 TCGA-06-0159 TCGA-06-0160 
       11.74         2.33        20.09         8.65         9.44        11.80 
TCGA-06-0162 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0178 TCGA-06-0184 
        2.56        10.65         5.29        19.04        53.98        40.37 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0190 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 
       26.33        28.47        10.29         4.67         2.60         0.39 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 
        5.46         4.96         0.20        12.43         0.33        18.02 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
       11.80        20.42        14.96         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
       12.33         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0744 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 
       19.53         2.14         0.92        43.46        46.19         7.17 
TCGA-06-0881 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 
        5.85        20.94         7.43         6.35        26.79         8.65 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2564 
       13.58        33.90         0.76         4.90         9.27         5.95 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        5.98         4.37        31.50        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 
        4.54         8.81         6.71         2.73         6.12         4.54 
TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6699 TCGA-06-6700 
        7.76         1.45         0.49         7.36         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68        34.75       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 
       13.78        10.39         7.59         3.39        53.79         6.41 
TCGA-08-0354 TCGA-08-0358 TCGA-08-0359 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       15.06        19.50         0.95        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0517 TCGA-08-0520 
       10.59         0.30         0.56        11.77        58.19        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        4.80         6.51        15.98        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0657 TCGA-12-0662 TCGA-12-0691 
       10.39         5.95         7.17         0.10        38.17         6.08 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0818 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-1088 
       91.73        10.62        23.51        38.76         8.91       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1095 TCGA-12-1096 
        5.82         6.21        30.54        21.63        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-3644 
       14.53         3.98         3.39         9.44        25.28        59.41 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        11.77        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0789 TCGA-14-0812 TCGA-14-0813 
       15.09        11.97         0.95        11.24         3.25         1.35 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1396 
        2.89        16.50         2.04        15.95        19.30         1.12 
TCGA-14-1401 TCGA-14-1450 TCGA-14-1451 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
        3.75        58.78        23.11         1.15        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.93         6.12        12.43         0.99         1.94        17.75 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-3477 TCGA-14-4157 TCGA-15-1444 
        7.63         5.88         7.13         3.75         3.39        50.53 
TCGA-15-1446 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
       19.10         9.93        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        0.82         9.90        13.35        18.28        13.97         6.41 
TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1387 
       21.86         0.43        14.27         3.39        10.75         5.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        4.64        25.38        12.66         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-4065 
        1.08         7.53         0.16         4.08        16.47         7.04 
TCGA-19-5947 TCGA-19-5952 TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 TCGA-19-5960 
        6.64        18.64         4.73         1.78         6.51         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1442 TCGA-26-1443 TCGA-26-5132 TCGA-26-5133 
       10.03        13.87        31.33         7.10         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6174 TCGA-27-1830 
        5.49         8.84         1.22         1.58         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       16.57         9.86        30.05        14.04        11.51        24.72 
TCGA-27-2524 TCGA-28-1746 TCGA-28-1747 TCGA-28-1750 TCGA-28-1752 TCGA-28-1753 
        7.59         0.20         2.53         8.32         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2514 TCGA-28-5204 
        1.51         2.83         0.13         0.66         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5216 
        9.04        15.55        14.53        11.77         9.80        13.64 
TCGA-28-5219 TCGA-28-5220 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1982 
        8.52        10.49        15.35        21.07         0.49         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 TCGA-32-2616 TCGA-32-4208 
       12.69        14.83        16.93        20.78         7.33        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2573 TCGA-41-3392 
        3.68        12.59        19.82        10.85         8.94         0.99 
TCGA-41-3915 TCGA-41-4097 TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       11.84         0.20         3.45         4.31        14.33         7.46 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         9.14         2.53        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6662 
        3.29         2.70        17.06         8.32        20.94         9.24 
TCGA-76-6663 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         1.61        17.69         0.07 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.10               0.07 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             92.61             127.56 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             10.32               9.86 
[1] "0.1 - 92.6 (10.3)" "0.1 - 127.6 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"20Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"20Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"20Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D37V2, continuous
D37V3, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED    88 119
  20Q GAIN WILD-TYPE 130 216
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     88  119
  20Q GAIN WILD-TYPE  130  216
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               88                130
  MALE                119                216
D37V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  20Q GAIN MUTATED                               3                   9
  20Q GAIN WILD-TYPE                             7                   9
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  20Q GAIN MUTATED                               195
  20Q GAIN WILD-TYPE                             330
D37V5, multiclass
                                 clus
vv                                20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  3                  7
  TREATED PRIMARY GBM                            9                  9
  UNTREATED PRIMARY (DE NOVO) GBM              195                330
D37V6, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED   146  61
  20Q GAIN WILD-TYPE 236 110
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED    146   61
  20Q GAIN WILD-TYPE  236  110
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO               146                236
  YES               61                110

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED     9  49
  21Q GAIN WILD-TYPE  99 396
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                58                495 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                49                396 
$`21Q GAIN MUTATED`
TCGA-02-0001 TCGA-02-0006 TCGA-02-0025 TCGA-02-0055 TCGA-02-0069 TCGA-02-0075 
        9.14        18.35        42.74         2.50        28.70        20.84 
TCGA-02-0079 TCGA-02-0113 TCGA-02-0337 TCGA-06-0130 TCGA-06-0140 TCGA-06-0149 
       27.22        92.61        25.12        10.52         0.20         7.82 
TCGA-06-0151 TCGA-06-0164 TCGA-06-0168 TCGA-06-0176 TCGA-06-0177 TCGA-06-0189 
       46.59        56.84        19.04        90.97         1.97        14.93 
TCGA-06-0197 TCGA-06-0216 TCGA-06-0237 TCGA-06-0644 TCGA-06-0743 TCGA-06-1084 
        2.60        22.49        10.32        12.33        22.29         7.43 
TCGA-06-1086 TCGA-06-1087 TCGA-06-2565 TCGA-06-2567 TCGA-06-5415 TCGA-06-6698 
        6.35         3.58         6.81         4.37         8.55         4.77 
TCGA-08-0246 TCGA-08-0386 TCGA-08-0510 TCGA-12-0619 TCGA-12-0822 TCGA-12-1095 
        3.91        15.72         3.48        10.39        23.51        15.85 
TCGA-12-1602 TCGA-12-3646 TCGA-14-0871 TCGA-14-1034 TCGA-14-1454 TCGA-16-0846 
        6.38        43.20        28.90        15.95        30.15         3.91 
TCGA-19-1388 TCGA-19-1392 TCGA-19-1787 TCGA-27-1832 TCGA-27-2526 TCGA-27-2527 
       12.95         3.48        12.66         9.86         2.86        14.40 
TCGA-28-2506 TCGA-28-2509 TCGA-28-5207 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
        6.74         4.77         9.04         7.79        13.64         4.21 
TCGA-32-2615 TCGA-32-2632 TCGA-41-2575 TCGA-41-3915 
       15.95         8.84         9.53        11.84 

$`21Q GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
        4.73        23.18        10.59        35.41        20.71        82.55 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0026 
       20.61        55.86        77.62        20.12        53.06        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       10.36        90.58         2.83        14.14         3.58        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       10.52        18.28         6.84        14.70         3.19        15.06 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
       12.59         6.54        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0080 
       19.73        26.43        25.05         5.49        10.19        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
       25.71         4.37        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0141 
       18.74        14.07        23.05        22.16        10.75         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 TCGA-06-0166 TCGA-06-0169 
        9.44        11.80         2.56        10.65         5.29         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0178 TCGA-06-0179 
       13.02         0.23         2.20         2.73        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0190 
        2.53        40.37        73.84        26.33        28.47        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
       18.28         4.67         7.04         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 
        3.88         4.96        11.84         0.20        12.43         0.33 
TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       18.02        11.80        20.42        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        0.26        70.52         4.67         8.05         0.16        35.01 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
       20.94        26.79         8.65         7.86        13.58        33.90 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83        30.64 
TCGA-06-2564 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.95         5.98         0.43        31.50        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5416 TCGA-06-5418 
        8.35         4.54         8.81         8.98         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.12         4.54         3.91         7.76         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 
        1.45         0.49         7.36         8.28        12.85         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        4.77         4.96        22.68        34.75       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 
       19.50         0.95         9.17        10.85         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.30         0.56        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 
        5.52        14.01        14.40         1.61         5.95         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       18.48        10.62        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       11.38         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       25.28        13.61        59.41        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.09        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       16.50        26.33         2.04        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
        1.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
       17.49         7.96         3.75         3.39         9.86        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       19.10        53.19         5.49         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        4.64        25.38         7.13         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1833 
        1.58         7.92         2.30         4.80        16.57        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2528 TCGA-28-1746 
       10.39        10.39        16.08         7.59        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 
        1.51         2.83         0.13         0.66         7.30         5.26 
TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        3.91        15.55        14.53        11.77         9.80        14.20 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 
       14.83        16.93        12.23        20.78        14.99         7.33 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        21.17        21.14         3.68        12.59        19.82 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 
       10.85        10.62         0.85        13.35         8.94         0.99 
TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        4.44         0.20        11.54         7.73         3.45        20.88 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.31        14.33         8.22         7.46         4.77         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.14         2.53        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.32        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.20               0.07 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             92.61             127.56 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            10.455              9.860 
[1] "0.2 - 92.6 (10.5)" "0.1 - 127.6 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"21Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
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        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"21Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"21Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D38V2, continuous
D38V3, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED    24  34
  21Q GAIN WILD-TYPE 194 301
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED     24   34
  21Q GAIN WILD-TYPE  194  301
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE               24                194
  MALE                 34                301
D38V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  21Q GAIN MUTATED                               2                   1
  21Q GAIN WILD-TYPE                             8                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  21Q GAIN MUTATED                                55
  21Q GAIN WILD-TYPE                             470
D38V5, multiclass
                                 clus
vv                                21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  2                  8
  TREATED PRIMARY GBM                            1                 17
  UNTREATED PRIMARY (DE NOVO) GBM               55                470
D38V6, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED    41  17
  21Q GAIN WILD-TYPE 341 154
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED     41   17
  21Q GAIN WILD-TYPE  341  154
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                41                341
  YES               17                154

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED     7  26
  22Q GAIN WILD-TYPE 101 419
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                33                520 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                26                419 
$`22Q GAIN MUTATED`
TCGA-02-0051 TCGA-02-0055 TCGA-02-0069 TCGA-02-0074 TCGA-02-0106 TCGA-02-0281 
       15.06         2.50        28.70        10.19        11.67         3.98 
TCGA-02-0324 TCGA-06-0130 TCGA-06-0209 TCGA-06-0409 TCGA-06-1086 TCGA-06-1087 
        7.69        10.52         3.88        70.52         6.35         3.58 
TCGA-06-2569 TCGA-08-0510 TCGA-12-0618 TCGA-12-0827 TCGA-12-1099 TCGA-12-1602 
        0.43         3.48         1.61        38.76         3.39         6.38 
TCGA-14-0813 TCGA-14-0871 TCGA-15-1449 TCGA-16-0846 TCGA-19-1387 TCGA-19-1388 
        1.35        28.90         5.49         3.91         5.95        12.95 
TCGA-19-1390 TCGA-19-4065 TCGA-27-2521 TCGA-28-1746 TCGA-28-5215 TCGA-28-5216 
       25.38         7.04        10.39         0.20         7.79        13.64 
TCGA-28-5218 TCGA-32-2616 TCGA-32-4211 
        4.21         7.33        12.59 

$`22Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 
       14.70         3.19        12.59         6.54        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        9.57         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       17.65        23.15        92.61        99.95        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 
       16.54        16.90        17.69        10.75        14.47        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 
       14.20        15.95        12.23         9.86        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       22.72        32.48        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        90.97 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        7.04         2.60         0.39         6.44         5.46         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.20        12.43        22.49         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       10.32        11.80        20.42        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
        0.26         4.67         8.05         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        5.42        20.94         7.43        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58        33.90         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83        30.64         5.95         6.81         5.98         4.37 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.96        22.68        34.75         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
       10.59         0.30         0.56        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0619 TCGA-12-0620 
       17.29         5.52        14.01        14.40        10.39         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 
       24.76        18.48        10.62        23.51        27.78         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
        9.44        25.28        13.61        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0817 
       23.05         2.24        11.24        13.74         3.25         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 
        2.89        16.50        26.33         2.04        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.12        12.43         0.99         1.94        17.75        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-16-0848 
        3.39         9.86        50.53        19.10        53.19         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.31         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        9.07         4.64         3.48         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08        16.47         7.00         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.72        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       14.40        15.75         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5219 
       15.55        14.53        11.77         9.80        14.20         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.83 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        14.99        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4213 TCGA-32-4719 
       22.78        21.17        21.14         3.68        19.82        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.62         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       20.88         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.20               0.07 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             70.52             127.56 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             7.040             10.305 
[1] "0.2 - 70.5 (7.0)"   "0.1 - 127.6 (10.3)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"22Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"22Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-87-5896 
"22Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D39V2, continuous
D39V3, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED    13  20
  22Q GAIN WILD-TYPE 205 315
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     13   20
  22Q GAIN WILD-TYPE  205  315
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE               13                205
  MALE                 20                315
D39V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  22Q GAIN MUTATED                               0                   0
  22Q GAIN WILD-TYPE                            10                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  22Q GAIN MUTATED                                33
  22Q GAIN WILD-TYPE                             492
D39V5, multiclass
                                 clus
vv                                22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            0                 18
  UNTREATED PRIMARY (DE NOVO) GBM               33                492
D39V6, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED    22  11
  22Q GAIN WILD-TYPE 360 160
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     22   11
  22Q GAIN WILD-TYPE  360  160
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                22                360
  YES               11                160

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED     3  14
  XQ GAIN WILD-TYPE 105 431
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               17               536 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               14               431 
$`XQ GAIN MUTATED`
TCGA-02-0058 TCGA-02-0266 TCGA-02-0271 TCGA-02-0333 TCGA-06-0151 TCGA-06-0743 
        8.35        17.69        14.47         4.37        46.59        22.29 
TCGA-06-6698 TCGA-08-0510 TCGA-12-0773 TCGA-14-1455 TCGA-14-1823 TCGA-19-1787 
        4.77         3.48        43.10         0.92        17.82        12.66 
TCGA-26-1799 TCGA-28-5209 TCGA-28-5218 TCGA-32-2632 TCGA-32-4210 
        9.37        14.53         4.21         8.84         3.68 

$`XQ GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
       19.86         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        9.80         7.82        19.46        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        90.97         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        73.84        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       12.43        22.49         0.33        18.02        10.32        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.67         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 
        4.47         9.63         2.04        23.57         9.37        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        7.43         6.35         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58        33.90         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83        30.64         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43        31.50        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 
        0.49         7.36         8.28        12.85         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.96        22.68        34.75         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
       10.59         0.30         0.56        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
        5.95         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       53.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        3.98         3.39         9.44        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.52        11.74        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.74         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        7.10         1.15        30.15        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.94        17.75         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
       17.49         7.96         3.75         3.39         9.86        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        5.95        12.95         4.64        25.38         3.48         7.13 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
        9.73        31.33         7.10         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.57         9.86        18.25        33.14        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.17         8.32         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        2.83         0.13         0.66         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5211 TCGA-28-5213 
        5.26         3.91         9.04        15.55        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       14.20         7.79        13.64         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.35        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.83        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 
       20.78        14.99        15.95         7.33        22.78        21.17 
TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
       21.14        12.59        19.82        10.85        10.62         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        20.88         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             0.92              0.07 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            46.59            127.56 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             9.37              9.98 
[1] "0.9 - 46.6 (9.4)"   "0.1 - 127.6 (10.0)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-87-5896 
"XQ GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-87-5896 
"XQ GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-87-5896 
"XQ GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D40V2, continuous
D40V3, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED     6  11
  XQ GAIN WILD-TYPE 212 324
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      6   11
  XQ GAIN WILD-TYPE  212  324
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE               6               212
  MALE                11               324
D40V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  XQ GAIN MUTATED                               1                   1
  XQ GAIN WILD-TYPE                             9                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  XQ GAIN MUTATED                                15
  XQ GAIN WILD-TYPE                             510
D40V5, multiclass
                                 clus
vv                                XQ GAIN MUTATED XQ GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 1                 9
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              15               510
D40V6, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED     9   8
  XQ GAIN WILD-TYPE 373 163
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      9    8
  XQ GAIN WILD-TYPE  373  163
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                9               373
  YES               8               163

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED     2  12
  1P LOSS WILD-TYPE 106 433
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               14               539 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               12               433 
$`1P LOSS MUTATED`
TCGA-02-0028 TCGA-02-0269 TCGA-02-0281 TCGA-06-5411 TCGA-08-0244 TCGA-08-0344 
       90.58        10.75         3.98         8.35        22.68       108.82 
TCGA-08-0392 TCGA-14-0740 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-2629 
        0.30        11.97         5.95        12.95        25.38        16.47 
TCGA-41-4097 TCGA-74-6575 
        0.20        20.88 

$`1P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 
       53.06        42.74        24.59        10.36         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       17.69        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        90.97         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       28.47        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.20        12.43        22.49         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       10.32        11.80        20.42        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        0.26        70.52         4.67         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
        5.85         5.42        20.94         7.43         6.35         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58        33.90         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43        31.50        11.21 
TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        3.52         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.12         4.54         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.36         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0245 TCGA-08-0246 
        4.77         1.55         4.77         4.96        34.75         3.91 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
        3.19        10.59         0.56         3.48        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       18.44        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       10.39         5.95         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
        9.11        14.53         3.98         3.39         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       13.61         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
        2.01        15.09         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.12        12.43         0.99         1.94        17.75        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.39         9.86        50.53        19.10        53.19         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91         9.93        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 
        3.39        10.75         9.07         4.64         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        7.53         0.16         4.08         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.51         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.33         8.84        22.78        21.17        21.14         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.82        10.85        10.62         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 
        8.94         9.53         0.99         4.44        11.84        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        7.73         3.45         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.20              0.07 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           108.82            127.56 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            12.46              9.86 
[1] "0.2 - 108.8 (12.5)" "0.1 - 127.6 (9.9)" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-87-5896 
"1P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-87-5896 
"1P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-87-5896 
"1P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D41V2, continuous
D41V3, binary
                   cls
clus                  0   1
  1P LOSS MUTATED     4  10
  1P LOSS WILD-TYPE 214 325
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      4   10
  1P LOSS WILD-TYPE  214  325
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE               4               214
  MALE                10               325
D41V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  1P LOSS MUTATED                               0                   1
  1P LOSS WILD-TYPE                            10                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  1P LOSS MUTATED                                13
  1P LOSS WILD-TYPE                             512
D41V5, multiclass
                                 clus
vv                                1P LOSS MUTATED 1P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              13               512
D41V6, binary
                   cls
clus                  0   1
  1P LOSS MUTATED     8   6
  1P LOSS WILD-TYPE 374 165
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      8    6
  1P LOSS WILD-TYPE  374  165
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                8               374
  YES               6               165

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED     2  11
  1Q LOSS WILD-TYPE 106 434
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               13               540 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               11               434 
$`1Q LOSS MUTATED`
TCGA-02-0269 TCGA-02-0281 TCGA-06-5411 TCGA-08-0244 TCGA-08-0392 TCGA-14-0740 
       10.75         3.98         8.35        22.68         0.30        11.97 
TCGA-14-1034 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-2629 TCGA-41-4097 
       15.95         5.95        12.95        25.38        16.47         0.20 
TCGA-74-6575 
       20.88 

$`1Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.90        17.69        14.47        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        90.97 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       18.02        10.32        11.80        20.42        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58        33.90 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
       11.21         3.52         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.12         4.54         3.91 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.76         5.36         1.45         0.49         7.36         8.28 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0245 
       12.85         4.77         1.55         4.77         4.96        34.75 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 
       10.85        15.72         3.19        10.59         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       11.77         8.52        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.40         1.61        10.39         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        9.44        25.28        13.61         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 
       13.08         3.22         2.01        15.09         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        5.39         2.89        16.50        26.33         2.04        28.90 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.93         6.12        12.43         0.99         1.94        17.75 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
        3.75         3.39         9.86        50.53        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
        5.49         3.91         9.93        26.07        16.31         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
       13.97         6.41        11.77        21.86         8.61         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1389 TCGA-19-1392 
       14.27         3.39        10.75         9.07         4.64         3.48 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 
        1.08         7.53         0.16         4.08         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        1.78         6.51         5.39         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84        22.78        21.17        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        19.82        10.85        10.62         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
       11.54         7.73         3.45         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.20              0.07 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            25.38            127.56 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            11.97              9.88 
[1] "0.2 - 25.4 (12.0)" "0.1 - 127.6 (9.9)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"1Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"1Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"1Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D42V2, continuous
D42V3, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED     5   8
  1Q LOSS WILD-TYPE 213 327
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      5    8
  1Q LOSS WILD-TYPE  213  327
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE               5               213
  MALE                 8               327
D42V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  1Q LOSS MUTATED                               0                   0
  1Q LOSS WILD-TYPE                            10                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  1Q LOSS MUTATED                                13
  1Q LOSS WILD-TYPE                             512
D42V5, multiclass
                                 clus
vv                                1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           0                18
  UNTREATED PRIMARY (DE NOVO) GBM              13               512
D42V6, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED     7   6
  1Q LOSS WILD-TYPE 375 165
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      7    6
  1Q LOSS WILD-TYPE  375  165
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                7               375
  YES               6               165

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED     5  26
  2P LOSS WILD-TYPE 103 419
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               31               522 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               26               419 
$`2P LOSS MUTATED`
TCGA-02-0024 TCGA-02-0059 TCGA-02-0074 TCGA-02-0075 TCGA-06-0152 TCGA-06-0182 
       53.06         9.57        10.19        20.84        11.80         2.53 
TCGA-06-0188 TCGA-06-0410 TCGA-06-0414 TCGA-06-1087 TCGA-06-5416 TCGA-06-5856 
       28.47         4.67        35.01         3.58         6.71         3.75 
TCGA-06-6389 TCGA-06-6694 TCGA-12-0826 TCGA-12-1600 TCGA-12-3646 TCGA-14-0783 
        7.76         7.36        27.78        13.61        43.20         6.18 
TCGA-14-0812 TCGA-14-0867 TCGA-15-1447 TCGA-16-0850 TCGA-19-1388 TCGA-19-1390 
        3.25         2.04        53.19        16.31        12.95        25.38 
TCGA-19-1392 TCGA-19-2625 TCGA-19-5956 TCGA-28-2509 TCGA-28-5215 TCGA-32-2615 
        3.48         4.08         6.51         4.77         7.79        15.95 
TCGA-76-4934 
        2.53 

$`2P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        8.35         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
        5.49        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       11.67        17.65        23.15        92.61        99.95        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.90        17.69        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.69        10.62         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
        9.80         7.82        19.46        46.59        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        90.97         1.97        53.98        19.00 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       40.37        73.84        26.33        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
        0.33        18.02        10.32        11.80        20.42        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       10.29         5.52         0.26        70.52         8.05         0.16 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
        5.85         5.42        20.94         7.43         6.35        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58        33.90         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83        30.64         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43        31.50        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 
        8.35         4.54         8.81         8.98         8.55         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        6.12         4.54         3.91         5.36         1.45         0.49 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.30         0.56         3.48        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
        5.95         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.10        43.10         5.49         9.11        14.83        14.27 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 
       91.73        24.76        18.48        10.62        23.51        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 
        3.98         3.39         9.44        25.28         6.38        59.41 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.74         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
        2.89        16.50        26.33        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.12        12.43         0.99         1.94        17.75        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
        3.39         9.86        50.53        19.10         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
        9.93        26.07         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        9.07         5.95         4.64         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.64         4.73         7.96         1.78         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       18.25        33.14        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         6.74         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 
       15.55        14.53        11.77         9.80        14.20        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.33         8.84        22.78        21.17        21.14         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.82        10.85        10.62         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        20.88         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        9.14        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             2.04              0.07 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            53.19            127.56 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             7.79             10.16 
[1] "2.0 - 53.2 (7.8)"   "0.1 - 127.6 (10.2)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "2P LOSS MUTATED"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-87-5896 
"2P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "2P LOSS MUTATED"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-87-5896 
"2P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "2P LOSS MUTATED"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-87-5896 
"2P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D43V2, continuous
D43V3, binary
                   cls
clus                  0   1
  2P LOSS MUTATED    18  13
  2P LOSS WILD-TYPE 200 322
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED     18   13
  2P LOSS WILD-TYPE  200  322
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE              18               200
  MALE                13               322
D43V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  2P LOSS MUTATED                               0                   1
  2P LOSS WILD-TYPE                            10                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  2P LOSS MUTATED                                30
  2P LOSS WILD-TYPE                             495
D43V5, multiclass
                                 clus
vv                                2P LOSS MUTATED 2P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              30               495
D43V6, binary
                   cls
clus                  0   1
  2P LOSS MUTATED    18  13
  2P LOSS WILD-TYPE 364 158
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED     18   13
  2P LOSS WILD-TYPE  364  158
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO               18               364
  YES              13               158

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
D44V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED     4  28
  2Q LOSS WILD-TYPE 104 417
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               32               521 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               28               417 
$`2Q LOSS MUTATED`
TCGA-02-0024 TCGA-02-0059 TCGA-02-0074 TCGA-02-0075 TCGA-06-0152 TCGA-06-0182 
       53.06         9.57        10.19        20.84        11.80         2.53 
TCGA-06-0188 TCGA-06-0410 TCGA-06-0414 TCGA-06-1087 TCGA-06-5416 TCGA-06-5856 
       28.47         4.67        35.01         3.58         6.71         3.75 
TCGA-06-6694 TCGA-12-0826 TCGA-12-1099 TCGA-12-1600 TCGA-12-3646 TCGA-14-0783 
        7.36        27.78         3.39        13.61        43.20         6.18 
TCGA-14-0812 TCGA-14-0867 TCGA-15-1444 TCGA-15-1447 TCGA-16-0850 TCGA-19-1388 
        3.25         2.04        50.53        53.19        16.31        12.95 
TCGA-19-1390 TCGA-19-1392 TCGA-19-2625 TCGA-19-5956 TCGA-28-2509 TCGA-28-5215 
       25.38         3.48         4.08         6.51         4.77         7.79 
TCGA-32-2615 TCGA-76-4934 
       15.95         2.53 

$`2Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        8.35         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
        5.49        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       11.67        17.65        23.15        92.61        99.95        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.90        17.69        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.69        10.62         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
        9.80         7.82        19.46        46.59        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        90.97         1.97        53.98        19.00 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       40.37        73.84        26.33        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
        0.33        18.02        10.32        11.80        20.42        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       10.29         5.52         0.26        70.52         8.05         0.16 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
        5.85         5.42        20.94         7.43         6.35        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58        33.90         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83        30.64         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43        31.50        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 
        8.35         4.54         8.81         8.98         8.55         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        0.49         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.96        22.68        34.75         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       18.44        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
       10.39         5.95         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.91        20.58       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       30.54        21.63        11.97        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 
       14.53         3.98         9.44        25.28         6.38        59.41 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.74         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
        2.89        16.50        26.33        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.12        12.43         0.99         1.94        17.75        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
        3.39         9.86        19.10         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       26.07         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1389 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
        5.95         4.64         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 
        9.67         4.87         1.08         7.53         0.16        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73         7.96         1.78         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        6.74         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 
       14.53        11.77         9.80        14.20        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 
       14.83        16.93        12.23        20.78        14.99         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84        22.78        21.17        21.14         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.82        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             2.04              0.07 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            53.19            127.56 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             8.68             10.03 
[1] "2.0 - 53.2 (8.7)"   "0.1 - 127.6 (10.0)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"2Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"2Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"2Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D44V2, continuous
D44V3, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED    18  14
  2Q LOSS WILD-TYPE 200 321
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED     18   14
  2Q LOSS WILD-TYPE  200  321
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE              18               200
  MALE                14               321
D44V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  2Q LOSS MUTATED                               1                   1
  2Q LOSS WILD-TYPE                             9                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  2Q LOSS MUTATED                                30
  2Q LOSS WILD-TYPE                             495
D44V5, multiclass
                                 clus
vv                                2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 1                 9
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              30               495
D44V6, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED    17  15
  2Q LOSS WILD-TYPE 365 156
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED     17   15
  2Q LOSS WILD-TYPE  365  156
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO               17               365
  YES              15               156

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
D45V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED     7  31
  3P LOSS WILD-TYPE 101 414
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               38               515 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               31               414 
$`3P LOSS MUTATED`
TCGA-02-0055 TCGA-02-0083 TCGA-02-0084 TCGA-02-0106 TCGA-02-0113 TCGA-02-0266 
        2.50        22.72         0.23        11.67        92.61        17.69 
TCGA-02-0330 TCGA-02-0432 TCGA-02-2486 TCGA-06-0128 TCGA-06-0152 TCGA-06-0216 
       15.91        47.11        16.18        22.72        11.80        22.49 
TCGA-06-0221 TCGA-06-0409 TCGA-06-0878 TCGA-06-5416 TCGA-06-5859 TCGA-06-6390 
       18.02        70.52         7.17         6.71         4.54         5.36 
TCGA-08-0246 TCGA-08-0386 TCGA-08-0390 TCGA-08-0516 TCGA-12-0776 TCGA-12-0826 
        3.91        15.72        10.59        18.44         9.11        27.78 
TCGA-12-3653 TCGA-14-0862 TCGA-14-0871 TCGA-14-1458 TCGA-14-1823 TCGA-14-3477 
       11.74         2.89        28.90         6.12        17.82         3.75 
TCGA-15-1447 TCGA-15-1449 TCGA-19-1388 TCGA-26-1439 TCGA-28-1752 TCGA-32-1991 
       53.19         5.49        12.95        13.87         8.45        16.93 
TCGA-32-2615 TCGA-76-4929 
       15.95         3.65 

$`3P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 
       14.70         3.19        15.06        12.59         6.54        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.29         8.81        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       65.00        17.65        23.15        99.95        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.54        16.90        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        0.16        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       14.50        10.55        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 
       16.80        12.92        15.29        15.42         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 
        4.04        47.31         0.10         3.55        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
        9.80         7.82        19.46        46.59        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        90.97         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        73.84        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       12.43         0.33        10.32        11.80        20.42        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
       10.29         5.52         0.26         4.67         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0879 
        2.14         0.92        43.46        46.19         5.65        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
        5.85         5.42        20.94         7.43         6.35         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58        33.90         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43        31.50        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 
        2.73         3.75         6.12         3.91         7.76         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        4.77         4.96        22.68        34.75       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0392 
       19.50         0.95         9.17        10.85         3.19         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 
        0.56         3.48        11.77         8.52        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       14.01        14.40         1.61        10.39         5.95         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        5.49        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       10.62        23.51        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 
       11.54        10.95        11.77        34.52        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.01        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.74         3.25         1.35         5.39 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       16.50        26.33         2.04        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 
        7.10         1.15        30.15         0.92        40.93        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.94        17.75         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       17.49         7.96         3.39         9.86        50.53        19.10 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91         9.93        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 
        3.39        10.75         9.07         5.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
        5.42        10.03         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 
       12.69        14.83        12.23        20.78        14.99         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84        22.78        21.17        21.14         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.82        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 
        7.46         4.77         4.54         3.09         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.23              0.07 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            92.61            127.56 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            13.41              9.80 
[1] "0.2 - 92.6 (13.4)" "0.1 - 127.6 (9.8)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-87-5896 
"3P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-87-5896 
"3P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-87-5896 
"3P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D45V2, continuous
D45V3, binary
                   cls
clus                  0   1
  3P LOSS MUTATED    16  22
  3P LOSS WILD-TYPE 202 313
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     16   22
  3P LOSS WILD-TYPE  202  313
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE              16               202
  MALE                22               313
D45V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  3P LOSS MUTATED                               0                   2
  3P LOSS WILD-TYPE                            10                  16
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  3P LOSS MUTATED                                36
  3P LOSS WILD-TYPE                             489
D45V5, multiclass
                                 clus
vv                                3P LOSS MUTATED 3P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           2                16
  UNTREATED PRIMARY (DE NOVO) GBM              36               489
D45V6, binary
                   cls
clus                  0   1
  3P LOSS MUTATED    32   6
  3P LOSS WILD-TYPE 350 165
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     32    6
  3P LOSS WILD-TYPE  350  165
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO               32               350
  YES               6               165

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED     4  28
  3Q LOSS WILD-TYPE 104 417
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               32               521 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               28               417 
$`3Q LOSS MUTATED`
TCGA-02-0055 TCGA-02-0060 TCGA-02-0084 TCGA-02-0113 TCGA-02-0330 TCGA-06-0128 
        2.50         6.02         0.23        92.61        15.91        22.72 
TCGA-06-0152 TCGA-06-0214 TCGA-06-0216 TCGA-06-0221 TCGA-06-0409 TCGA-06-5859 
       11.80        12.43        22.49        18.02        70.52         4.54 
TCGA-06-6390 TCGA-08-0246 TCGA-08-0386 TCGA-08-0390 TCGA-08-0516 TCGA-12-0691 
        5.36         3.91        15.72        10.59        18.44         6.08 
TCGA-12-0826 TCGA-12-1099 TCGA-12-3653 TCGA-14-0812 TCGA-14-0871 TCGA-14-1458 
       27.78         3.39        11.74         3.25        28.90         6.12 
TCGA-14-1823 TCGA-15-1447 TCGA-15-1449 TCGA-19-1388 TCGA-26-1439 TCGA-28-1752 
       17.82        53.19         5.49        12.95        13.87         8.45 
TCGA-32-2615 TCGA-76-4929 
       15.95         3.65 

$`3Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 
       14.70         3.19        15.06        12.59         6.54        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        8.35         9.57        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.22        89.72        22.72 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.29         8.81        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 
       65.00        11.67        17.65        23.15        99.95        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.90        17.69        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
        7.69        10.62         0.16        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.24        16.18         3.35        16.80        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        0.10         3.55        32.48        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        46.59        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       90.97         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       73.84        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0219 TCGA-06-0237 
        3.88         4.96        11.84         0.20         0.33        10.32 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       11.80        20.42        14.96        10.29         5.52         0.26 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.67         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.94         7.43         6.35         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58        33.90         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 
        3.75         6.12         3.91         7.76         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68        34.75       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0392 TCGA-08-0509 
        0.95         9.17        10.85         3.19         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        3.48        11.77         8.52        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.40         1.61        10.39         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        25.97        24.13         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       23.51        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         3.98         9.44        25.28        13.61 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.38        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       11.77        34.52        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
       13.74         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
        2.04        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
       30.15         0.92        40.93        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.75         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 
        3.75         3.39         9.86        50.53        19.10         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
       10.75         9.07         5.95         4.64        25.38         3.48 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1753 
        0.20         2.53         9.17         8.32         7.59         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.51         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 
       14.83        16.93        12.23        20.78        14.99         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84        22.78        21.17        21.14         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.82        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 
        7.46         4.77         4.54         3.09         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.23              0.07 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            92.61            127.56 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           12.115             9.860 
[1] "0.2 - 92.6 (12.1)" "0.1 - 127.6 (9.9)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"3Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"3Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"3Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D46V2, continuous
D46V3, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED    15  17
  3Q LOSS WILD-TYPE 203 318
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     15   17
  3Q LOSS WILD-TYPE  203  318
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE              15               203
  MALE                17               318
D46V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  3Q LOSS MUTATED                               0                   1
  3Q LOSS WILD-TYPE                            10                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  3Q LOSS MUTATED                                31
  3Q LOSS WILD-TYPE                             494
D46V5, multiclass
                                 clus
vv                                3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              31               494
D46V6, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED    25   7
  3Q LOSS WILD-TYPE 357 164
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     25    7
  3Q LOSS WILD-TYPE  357  164
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO               25               357
  YES               7               164

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
D47V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED     8  46
  4P LOSS WILD-TYPE 100 399
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               54               499 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               46               399 
$`4P LOSS MUTATED`
TCGA-02-0014 TCGA-02-0026 TCGA-02-0054 TCGA-02-0079 TCGA-02-0106 TCGA-02-2483 
       82.55        24.59         6.54        27.22        11.67        15.29 
TCGA-02-2485 TCGA-06-0138 TCGA-06-0152 TCGA-06-0166 TCGA-06-0173 TCGA-06-0175 
       15.42        22.16        11.80         5.29         0.23         2.73 
TCGA-06-0177 TCGA-06-0216 TCGA-06-0414 TCGA-06-0645 TCGA-06-0744 TCGA-06-1087 
        1.97        22.49        35.01         3.22        19.53         3.58 
TCGA-06-1800 TCGA-06-2557 TCGA-06-5416 TCGA-06-6693 TCGA-08-0351 TCGA-08-0386 
       26.79         1.08         6.71         0.49        53.79        15.72 
TCGA-08-0525 TCGA-12-0619 TCGA-12-0827 TCGA-12-1598 TCGA-12-3644 TCGA-12-3646 
       15.98        10.39        38.76         9.44        59.41        43.20 
TCGA-12-3653 TCGA-14-0867 TCGA-14-1454 TCGA-14-1458 TCGA-14-1823 TCGA-15-1449 
       11.74         2.04        30.15         6.12        17.82         5.49 
TCGA-16-0848 TCGA-16-0849 TCGA-19-1387 TCGA-19-1390 TCGA-19-2629 TCGA-19-4065 
        9.93        26.07         5.95        25.38        16.47         7.04 
TCGA-27-1830 TCGA-27-1837 TCGA-27-1838 TCGA-28-2514 TCGA-28-5207 TCGA-28-5214 
        4.80        14.04        11.51         5.26         9.04        14.20 
TCGA-32-1973 TCGA-32-1978 TCGA-32-2632 TCGA-76-4925 TCGA-76-4928 TCGA-76-4934 
       21.07        15.85         8.84         4.77         3.09         2.53 

$`4P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       20.71        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.06        12.59         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       10.19        20.84        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       17.65        23.15        92.61        99.95        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.90        17.69        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         0.16        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2486 
        9.24        16.18         3.35        16.80        12.92        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        2.56        56.84        10.65        19.04         3.12        13.02 
TCGA-06-0174 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
        2.20        90.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       73.84        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 
        3.88         4.96        11.84         0.20        12.43         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       18.02        10.32        11.80        20.42        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
       12.33         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       22.29         5.36         2.70         2.14         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       20.94         7.43         6.35         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       33.90         0.76         4.90         9.27         2.83        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         2.73         3.75         6.12         4.54         3.91 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        7.76         5.36         1.45         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        4.77         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        7.59         3.39         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
        3.19        10.59         0.30         0.56         3.48        11.77 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        8.52        18.44        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        6.51        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
        5.95         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.10        43.10         5.49         9.11        14.83        14.27 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       91.73        24.76        18.48        10.62        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 
        3.98         3.39        25.28        13.61         6.38        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 
       11.54        10.95        11.77        34.52        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.01        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.74         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
        2.89        16.50        26.33        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 
       23.11         7.10         1.15         0.92        40.93        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.94        17.75         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
       17.49         7.96         3.75         3.39         9.86        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
       19.10        53.19         3.91        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 
        3.39        10.75         9.07        12.95         4.64         3.48 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 
        1.08         7.53         0.16         4.08         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.57         9.86        18.25        33.14        21.30        30.05 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 
        0.66         6.74         4.77         7.30         3.91        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       14.53        11.77         9.80         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 
        8.52        10.49         5.42        15.35         0.49         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.83        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 
       12.23        20.78        14.99        15.95         7.33        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.17        21.14         3.68        12.59        19.82        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.62         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 
       20.88         4.31        14.33         8.22         7.46         4.54 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        3.65         9.14        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.23              0.07 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            82.55            127.56 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           11.705             9.860 
[1] "0.2 - 82.5 (11.7)" "0.1 - 127.6 (9.9)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-87-5896 
"4P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-87-5896 
"4P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-87-5896 
"4P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D47V2, continuous
D47V3, binary
                   cls
clus                  0   1
  4P LOSS MUTATED    17  37
  4P LOSS WILD-TYPE 201 298
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     17   37
  4P LOSS WILD-TYPE  201  298
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              17               201
  MALE                37               298
D47V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  4P LOSS MUTATED                               0                   0
  4P LOSS WILD-TYPE                            10                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  4P LOSS MUTATED                                54
  4P LOSS WILD-TYPE                             471
D47V5, multiclass
                                 clus
vv                                4P LOSS MUTATED 4P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           0                18
  UNTREATED PRIMARY (DE NOVO) GBM              54               471
D47V6, binary
                   cls
clus                  0   1
  4P LOSS MUTATED    39  15
  4P LOSS WILD-TYPE 343 156
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     39   15
  4P LOSS WILD-TYPE  343  156
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO               39               343
  YES              15               156

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED    12  42
  4Q LOSS WILD-TYPE  96 403
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               54               499 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               42               403 
$`4Q LOSS MUTATED`
TCGA-02-0024 TCGA-02-0026 TCGA-02-0054 TCGA-02-0079 TCGA-02-0106 TCGA-02-2483 
       53.06        24.59         6.54        27.22        11.67        15.29 
TCGA-02-2485 TCGA-06-0138 TCGA-06-0152 TCGA-06-0166 TCGA-06-0177 TCGA-06-0216 
       15.42        22.16        11.80         5.29         1.97        22.49 
TCGA-06-0414 TCGA-06-0645 TCGA-06-0744 TCGA-06-1087 TCGA-06-1800 TCGA-06-1805 
       35.01         3.22        19.53         3.58        26.79        33.90 
TCGA-06-2557 TCGA-06-2569 TCGA-06-5416 TCGA-06-6389 TCGA-06-6693 TCGA-08-0386 
        1.08         0.43         6.71         7.76         0.49        15.72 
TCGA-08-0517 TCGA-12-0619 TCGA-12-0827 TCGA-12-1598 TCGA-12-3644 TCGA-12-3646 
       58.19        10.39        38.76         9.44        59.41        43.20 
TCGA-12-3653 TCGA-14-0740 TCGA-14-0867 TCGA-14-1453 TCGA-14-1454 TCGA-14-1458 
       11.74        11.97         2.04         1.15        30.15         6.12 
TCGA-14-1823 TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 TCGA-19-1387 TCGA-19-1390 
       17.82        53.19         5.49         9.93         5.95        25.38 
TCGA-19-2629 TCGA-19-4065 TCGA-26-1442 TCGA-27-1830 TCGA-27-1838 TCGA-28-2514 
       16.47         7.04        31.33         4.80        11.51         5.26 
TCGA-28-5207 TCGA-28-5214 TCGA-32-1973 TCGA-32-2632 TCGA-76-4934 TCGA-76-6285 
        9.04        14.20        21.07         8.84         2.53         8.32 

$`4Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.06        12.59         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       10.19        20.84        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       17.65        23.15        92.61        99.95        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.90        17.69        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         0.16        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2486 
        9.24        16.18         3.35        16.80        12.92        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        2.56        56.84        10.65        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 
        0.23         2.20         2.73        90.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        73.84        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       12.43         0.33        18.02        10.32        11.80        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       14.96        10.29         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        8.05         0.16        12.33         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       23.57         9.37        22.29         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1801 
        5.85         5.42        20.94         7.43         6.35         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
        7.86        13.58         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
       30.64         5.95         6.81         5.98         4.37        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         2.73         3.75         6.12         4.54         3.91 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        5.36         1.45         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        1.55         4.77         4.96        22.68        34.75         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
        3.19        10.59         0.30         0.56         3.48        11.77 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
        8.52        18.44         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
        5.95         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.10        43.10         5.49         9.11        14.83        14.27 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       91.73        24.76        18.48        10.62        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 
        3.98         3.39        25.28        13.61         6.38        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 
       11.54        10.95        11.77        34.52        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
        2.01        15.09         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       16.50        26.33        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        7.10         0.92        40.93        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.75         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0846 
        3.75         3.39         9.86        50.53        19.10         3.91 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.31         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
        9.07        12.95         4.64         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        0.16         4.08         7.00         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 
        5.29         5.42        10.03        13.87         9.73         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        1.58         7.92         2.30        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 
       33.14        21.30        30.05        14.04        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        4.77         7.30         3.91        15.55        14.53        11.77 
TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
        9.80         7.79        13.64         4.21         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        5.42        15.35         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.83        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 
       20.78        14.99        15.95         7.33        22.78        21.17 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.68        12.59        19.82        10.85        10.62 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        11.54         7.73         3.45        20.88 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.31        14.33         8.22         7.46         4.77         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.09         3.65         9.14        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
        2.70        11.38        17.06        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.43              0.07 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            59.41            127.56 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           11.705             9.860 
[1] "0.4 - 59.4 (11.7)" "0.1 - 127.6 (9.9)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"4Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"4Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"4Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D48V2, continuous
D48V3, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED    21  33
  4Q LOSS WILD-TYPE 197 302
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     21   33
  4Q LOSS WILD-TYPE  197  302
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              21               197
  MALE                33               302
D48V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  4Q LOSS MUTATED                               0                   1
  4Q LOSS WILD-TYPE                            10                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  4Q LOSS MUTATED                                53
  4Q LOSS WILD-TYPE                             472
D48V5, multiclass
                                 clus
vv                                4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              53               472
D48V6, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED    39  15
  4Q LOSS WILD-TYPE 343 156
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     39   15
  4Q LOSS WILD-TYPE  343  156
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO               39               343
  YES              15               156

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
D49V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED     9  35
  5P LOSS WILD-TYPE  99 410
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               44               509 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               35               410 
$`5P LOSS MUTATED`
TCGA-02-0025 TCGA-02-0052 TCGA-02-0069 TCGA-02-0084 TCGA-02-0115 TCGA-02-0325 
       42.74        12.59        28.70         0.23        15.65        10.62 
TCGA-02-0339 TCGA-02-2483 TCGA-06-0128 TCGA-06-0188 TCGA-06-0237 TCGA-06-0414 
       12.39        15.29        22.72        28.47        10.32        35.01 
TCGA-06-0644 TCGA-06-0686 TCGA-06-1087 TCGA-06-6389 TCGA-08-0245 TCGA-08-0344 
       12.33         9.37         3.58         7.76        34.75       108.82 
TCGA-08-0386 TCGA-08-0516 TCGA-08-0517 TCGA-12-0818 TCGA-12-3652 TCGA-12-3653 
       15.72        18.44        58.19        91.73        34.52        11.74 
TCGA-14-0740 TCGA-14-0817 TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 TCGA-14-1453 
       11.97         5.39        16.50         2.04        28.90         1.15 
TCGA-14-1821 TCGA-14-3477 TCGA-16-0850 TCGA-19-1387 TCGA-19-4065 TCGA-19-5954 
       17.75         3.75        16.31         5.95         7.04         7.96 
TCGA-26-5133 TCGA-27-1834 TCGA-27-2521 TCGA-28-1755 TCGA-28-5215 TCGA-41-5651 
       14.86        33.14        10.39         1.51         7.79        11.54 
TCGA-76-4925 TCGA-76-4929 
        4.77         3.65 

$`5P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       53.06        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
        3.19        15.06         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        9.57         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 
       10.19        20.84        27.22        89.72        22.72        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 
       11.67        17.65        23.15        92.61        99.95        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.90        17.69        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        0.16        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
        3.35        16.80        12.92        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 
        0.26         4.04        47.31         0.10         3.55        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        90.97         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       14.93        10.29        18.28         4.67         7.04         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 
        0.20        12.43        22.49         0.33        18.02        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        4.67         8.05         0.16         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        2.04        23.57        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58        33.90         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43        31.50        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.12         4.54         3.91 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.36         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 
        4.77         1.55         4.77         4.96        22.68         3.91 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 
       35.64        19.50         0.95         9.17        10.85         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        5.52        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 
       43.10         5.49         9.11        14.83        14.27        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-5295 
       43.20        25.78        11.54        10.95        11.77        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        3.22         2.01        15.09         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 
        2.24        11.24        13.74         3.25         1.35         2.89 
TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       26.33        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 
        3.75        32.02        58.78        23.11         7.10        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.39         9.86        50.53        19.10        53.19         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        3.91         9.93        26.07         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
       10.75         9.07        12.95         4.64        25.38         3.48 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5955 
        6.64        11.28         8.02        18.64         4.73         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 
        9.73        31.33         7.10         9.37         9.40         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.57         9.86        18.25        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.72        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        7.59         8.45         1.18         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 
       15.55        14.53        11.77         9.80        14.20        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84        22.78        21.17        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        19.82        10.85        10.62         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        0.20         7.73         3.45        20.88         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 
        8.22         7.46         4.54         3.09         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.23              0.07 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           108.82            127.56 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            12.36              9.73 
[1] "0.2 - 108.8 (12.4)" "0.1 - 127.6 (9.7)" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-87-5896 
"5P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-87-5896 
"5P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-87-5896 
"5P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D49V2, continuous
D49V3, binary
                   cls
clus                  0   1
  5P LOSS MUTATED    17  27
  5P LOSS WILD-TYPE 201 308
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED     17   27
  5P LOSS WILD-TYPE  201  308
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE              17               201
  MALE                27               308
D49V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  5P LOSS MUTATED                               0                   1
  5P LOSS WILD-TYPE                            10                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  5P LOSS MUTATED                                43
  5P LOSS WILD-TYPE                             482
D49V5, multiclass
                                 clus
vv                                5P LOSS MUTATED 5P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              43               482
D49V6, binary
                   cls
clus                  0   1
  5P LOSS MUTATED    36   8
  5P LOSS WILD-TYPE 346 163
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED     36    8
  5P LOSS WILD-TYPE  346  163
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO               36               346
  YES               8               163

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
D50V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED    11  33
  5Q LOSS WILD-TYPE  97 412
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               44               509 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               33               412 
$`5Q LOSS MUTATED`
TCGA-02-0011 TCGA-02-0025 TCGA-02-0051 TCGA-02-0052 TCGA-02-0069 TCGA-02-0084 
       20.71        42.74        15.06        12.59        28.70         0.23 
TCGA-02-0325 TCGA-02-2483 TCGA-06-0128 TCGA-06-0188 TCGA-06-0237 TCGA-06-0414 
       10.62        15.29        22.72        28.47        10.32        35.01 
TCGA-06-0644 TCGA-06-0686 TCGA-06-1087 TCGA-06-2569 TCGA-06-6389 TCGA-08-0344 
       12.33         9.37         3.58         0.43         7.76       108.82 
TCGA-08-0350 TCGA-08-0386 TCGA-08-0516 TCGA-12-0818 TCGA-12-3652 TCGA-12-3653 
        3.39        15.72        18.44        91.73        34.52        11.74 
TCGA-14-0740 TCGA-14-0817 TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 TCGA-14-1453 
       11.97         5.39        16.50         2.04        28.90         1.15 
TCGA-14-1821 TCGA-14-3477 TCGA-16-0850 TCGA-19-0960 TCGA-19-1387 TCGA-19-4065 
       17.75         3.75        16.31         8.61         5.95         7.04 
TCGA-19-5954 TCGA-26-5133 TCGA-27-1834 TCGA-27-2521 TCGA-28-5215 TCGA-41-5651 
        7.96        14.86        33.14        10.39         7.79        11.54 
TCGA-76-4925 TCGA-76-4929 
        4.77         3.65 

$`5Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
        6.54         2.50        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       19.73        26.43        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       27.22        89.72        22.72        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 
       14.20        15.95        12.23         9.86         7.69         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
        3.35        16.80        12.92        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 
        0.26         4.04        47.31         0.10         3.55        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        90.97         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       14.93        10.29        18.28         4.67         7.04         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 
        0.20        12.43        22.49         0.33        18.02        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        4.67         8.05         0.16         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        2.04        23.57        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58        33.90         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        6.81         5.98         4.37        31.50        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 
        2.73         3.75         6.12         4.54         3.91         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.45         0.49         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        1.55         4.77         4.96        22.68        34.75         3.91 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0351 
        1.74         4.34        13.78        10.39         7.59        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 
       19.50         0.95         9.17        10.85         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 
        0.30         0.56         3.48        11.77         8.52        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        5.52        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 
       43.10         5.49         9.11        14.83        14.27        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-5295 
       43.20        25.78        11.54        10.95        11.77        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        3.22         2.01        15.09         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 
        2.24        11.24        13.74         3.25         1.35         2.89 
TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       26.33        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 
        3.75        32.02        58.78        23.11         7.10        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.39         9.86        50.53        19.10        53.19         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        3.91         9.93        26.07         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       11.77        21.86         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        9.07        12.95         4.64        25.38         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 
        7.53         0.16         4.08        16.47         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 
       11.28         8.02        18.64         4.73         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        5.39         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 
       31.33         7.10         9.37         9.40         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
        9.86        18.25        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       24.72        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 
       15.55        14.53        11.77         9.80        14.20        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84        22.78        21.17        21.14 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        19.82        10.85        10.62         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        0.20         7.73         3.45        20.88         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 
        8.22         7.46         4.54         3.09         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.23              0.07 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           108.82            127.56 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           11.855             9.800 
[1] "0.2 - 108.8 (11.9)" "0.1 - 127.6 (9.8)" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"5Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"5Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"5Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D50V2, continuous
D50V3, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED    17  27
  5Q LOSS WILD-TYPE 201 308
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     17   27
  5Q LOSS WILD-TYPE  201  308
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              17               201
  MALE                27               308
D50V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  5Q LOSS MUTATED                               0                   0
  5Q LOSS WILD-TYPE                            10                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  5Q LOSS MUTATED                                44
  5Q LOSS WILD-TYPE                             481
D50V5, multiclass
                                 clus
vv                                5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           0                18
  UNTREATED PRIMARY (DE NOVO) GBM              44               481
D50V6, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED    35   9
  5Q LOSS WILD-TYPE 347 162
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     35    9
  5Q LOSS WILD-TYPE  347  162
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO               35               347
  YES               9               162

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
D51V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    12  71
  6P LOSS WILD-TYPE  96 374
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               83               470 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               71               374 
$`6P LOSS MUTATED`
TCGA-02-0023 TCGA-02-0026 TCGA-02-0039 TCGA-02-0048 TCGA-02-0051 TCGA-02-0074 
       20.12        24.59        10.52         3.19        15.06        10.19 
TCGA-02-0080 TCGA-02-0086 TCGA-02-0106 TCGA-02-0113 TCGA-02-0115 TCGA-02-0281 
       89.72         8.81        11.67        92.61        15.65         3.98 
TCGA-02-0317 TCGA-02-0324 TCGA-02-0325 TCGA-02-2483 TCGA-06-0129 TCGA-06-0130 
       12.23         7.69        10.62        15.29        32.48        10.52 
TCGA-06-0138 TCGA-06-0141 TCGA-06-0162 TCGA-06-0166 TCGA-06-0184 TCGA-06-0192 
       22.16         9.21         2.56         5.29        40.37        18.28 
TCGA-06-0209 TCGA-06-0216 TCGA-06-0402 TCGA-06-0644 TCGA-06-0649 TCGA-06-1087 
        3.88        22.49         0.26        12.33         2.04         3.58 
TCGA-06-2557 TCGA-06-2561 TCGA-06-5410 TCGA-06-5416 TCGA-06-5856 TCGA-06-6390 
        1.08         9.27         3.52         6.71         3.75         5.36 
TCGA-06-6694 TCGA-08-0246 TCGA-08-0353 TCGA-08-0392 TCGA-08-0512 TCGA-12-0616 
        7.36         3.91         6.41         0.30        11.77        14.40 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0822 TCGA-12-1098 TCGA-12-1099 TCGA-12-1602 
        6.08         2.63        23.51         3.98         3.39         6.38 
TCGA-12-3646 TCGA-12-3653 TCGA-14-0736 TCGA-14-0817 TCGA-14-0865 TCGA-14-1453 
       43.20        11.74        15.09         5.39        16.50         1.15 
TCGA-14-1823 TCGA-14-3477 TCGA-16-0846 TCGA-19-0962 TCGA-19-1392 TCGA-19-2629 
       17.82         3.75         3.91         0.43         3.48        16.47 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5960 TCGA-26-1439 TCGA-27-1832 TCGA-28-1750 
        7.04         6.64         5.42        13.87         9.86         8.32 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2514 TCGA-28-5220 TCGA-32-1976 TCGA-32-1980 
        6.74         4.77         5.26        10.49         0.49         1.18 
TCGA-32-2495 TCGA-32-2615 TCGA-32-4210 TCGA-32-4211 TCGA-32-4719 TCGA-41-4097 
       14.99        15.95         3.68        12.59        10.85         0.20 
TCGA-41-5651 TCGA-74-6573 TCGA-74-6575 TCGA-76-4928 TCGA-76-4931 
       11.54         3.45        20.88         3.09         9.14 

$`6P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0024 
       20.71        82.55        20.61        55.86        77.62        53.06 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0052 TCGA-02-0054 
       10.72        18.28         6.84        14.70        12.59         6.54 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        2.50        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 
       26.43        28.70        25.05         5.49        20.84        27.22 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       22.72         0.23        51.29        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0116 
       26.99        65.00        17.65        23.15        99.95        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 
       16.54        16.90        17.69        10.75        14.47        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0321 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
       14.20        15.95         9.86         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       12.92        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0132 TCGA-06-0133 
       47.31         0.10         3.55        22.72        18.74        14.07 
TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       23.05        10.75         0.20         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       11.80        56.84        10.65        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        0.23         2.20         2.73        90.97         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
       19.00         2.53        73.84        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.29         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 
        5.46         4.96        11.84         0.20        12.43         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       18.02        10.32        11.80        20.42        14.96        10.29 
TCGA-06-0397 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        5.52        70.52         4.67         8.05         0.16        35.01 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        3.22         4.47         9.63        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       20.94         7.43         6.35        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 
       13.58        33.90         0.76         4.90         2.83        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
       11.21         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 
        2.73         6.12         4.54         3.91         7.76         1.45 
TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        0.49         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68        34.75       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 
        9.17        10.85        15.72         3.19        10.59         0.56 
TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        3.48         8.52        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
        1.61        10.39         5.95         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       38.17        25.97        24.13        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.10        43.10         5.49         9.11        14.83        14.27 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 
       91.73        24.76        18.48        10.62        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 
        9.44        25.28        13.61        59.41        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        11.77        34.52        13.08         3.22         2.01 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0866 TCGA-14-0867 
       13.74         3.25         1.35         2.89        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.90        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 
        3.75        32.02        58.78        23.11         7.10        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.75         7.63         5.88         7.13        17.49         7.96 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.39         9.86        50.53        19.10        53.19         5.49 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       11.77        21.86         8.61        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 
        9.07         5.95        12.95         4.64        25.38         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-5950 TCGA-19-5951 
        7.53         0.16         4.08         7.00        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
        5.29        10.03         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1833 TCGA-27-1834 
        7.92         2.30         4.80        16.57        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        0.20         2.53         9.17         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-5204 
        1.51         2.83         0.13         0.66         7.30         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55        14.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 
        7.79        13.64         4.21         8.52         5.42        15.35 
TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 
       21.07         0.10        15.85        19.50         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2616 TCGA-32-2632 
       14.83        16.93        12.23        20.78         7.33         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 
       22.78        21.17        21.14        19.82        10.62         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-6646 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
        7.73         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        4.54         3.65         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.20              0.07 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            92.61            127.56 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            8.320            10.375 
[1] "0.2 - 92.6 (8.3)"   "0.1 - 127.6 (10.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-87-5896 
"6P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-87-5896 
"6P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-87-5896 
"6P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D51V2, continuous
D51V3, binary
                   cls
clus                  0   1
  6P LOSS MUTATED    36  47
  6P LOSS WILD-TYPE 182 288
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     36   47
  6P LOSS WILD-TYPE  182  288
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE              36               182
  MALE                47               288
D51V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  6P LOSS MUTATED                               0                   3
  6P LOSS WILD-TYPE                            10                  15
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  6P LOSS MUTATED                                80
  6P LOSS WILD-TYPE                             445
D51V5, multiclass
                                 clus
vv                                6P LOSS MUTATED 6P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           3                15
  UNTREATED PRIMARY (DE NOVO) GBM              80               445
D51V6, binary
                   cls
clus                  0   1
  6P LOSS MUTATED    55  28
  6P LOSS WILD-TYPE 327 143
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     55   28
  6P LOSS WILD-TYPE  327  143
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO               55               327
  YES              28               143

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
D52V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    20 100
  6Q LOSS WILD-TYPE  88 345
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              120               433 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              100               345 
$`6Q LOSS MUTATED`
TCGA-02-0007 TCGA-02-0023 TCGA-02-0026 TCGA-02-0039 TCGA-02-0048 TCGA-02-0051 
       23.18        20.12        24.59        10.52         3.19        15.06 
TCGA-02-0060 TCGA-02-0074 TCGA-02-0080 TCGA-02-0086 TCGA-02-0106 TCGA-02-0113 
        6.02        10.19        89.72         8.81        11.67        92.61 
TCGA-02-0115 TCGA-02-0258 TCGA-02-0281 TCGA-02-0317 TCGA-02-0324 TCGA-02-0325 
       15.65        16.54         3.98        12.23         7.69        10.62 
TCGA-02-0330 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-2483 TCGA-06-0129 
       15.91        14.50        10.55        47.11        15.29        32.48 
TCGA-06-0130 TCGA-06-0138 TCGA-06-0141 TCGA-06-0162 TCGA-06-0166 TCGA-06-0184 
       10.52        22.16         9.21         2.56         5.29        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0192 TCGA-06-0209 TCGA-06-0214 TCGA-06-0216 
       73.84        26.33        18.28         3.88        12.43        22.49 
TCGA-06-0402 TCGA-06-0644 TCGA-06-0649 TCGA-06-0750 TCGA-06-1087 TCGA-06-2557 
        0.26        12.33         2.04         0.92         3.58         1.08 
TCGA-06-2561 TCGA-06-5408 TCGA-06-5410 TCGA-06-5413 TCGA-06-5416 TCGA-06-5856 
        9.27        11.21         3.52         8.81         6.71         3.75 
TCGA-06-6390 TCGA-06-6694 TCGA-08-0246 TCGA-08-0353 TCGA-08-0358 TCGA-08-0380 
        5.36         7.36         3.91         6.41        19.50        10.85 
TCGA-08-0392 TCGA-08-0512 TCGA-08-0517 TCGA-08-0525 TCGA-12-0615 TCGA-12-0616 
        0.30        11.77        58.19        15.98        14.01        14.40 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0691 TCGA-12-0692 TCGA-12-0772 TCGA-12-0822 
        7.17        65.88         6.08         2.63        53.10        23.51 
TCGA-12-1095 TCGA-12-1099 TCGA-12-1602 TCGA-12-3646 TCGA-12-3653 TCGA-12-5299 
       15.85         3.39         6.38        43.20        11.74         3.22 
TCGA-14-0736 TCGA-14-0817 TCGA-14-0865 TCGA-14-1037 TCGA-14-1453 TCGA-14-1823 
       15.09         5.39        16.50        19.30         1.15        17.82 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
        3.75         3.39         9.86         3.91         4.27        29.00 
TCGA-16-1063 TCGA-19-0962 TCGA-19-1392 TCGA-19-2629 TCGA-19-4065 TCGA-19-5947 
       13.97         0.43         3.48        16.47         7.04         6.64 
TCGA-19-5952 TCGA-19-5960 TCGA-26-1439 TCGA-26-1443 TCGA-27-1832 TCGA-27-2524 
       18.64         5.42        13.87         7.10         9.86         7.59 
TCGA-28-1750 TCGA-28-2506 TCGA-28-2509 TCGA-28-2514 TCGA-28-5204 TCGA-28-5209 
        8.32         6.74         4.77         5.26         3.91        14.53 
TCGA-28-5213 TCGA-28-5220 TCGA-32-1976 TCGA-32-1980 TCGA-32-2495 TCGA-32-2615 
        9.80        10.49         0.49         1.18        14.99        15.95 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4719 TCGA-41-3392 TCGA-41-4097 
       21.14         3.68        12.59        10.85         0.99         0.20 
TCGA-41-5651 TCGA-74-6573 TCGA-74-6575 TCGA-76-4928 TCGA-76-4931 TCGA-76-6285 
       11.54         3.45        20.88         3.09         9.14         8.32 

$`6Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        9.14         4.73        18.35        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0024 TCGA-02-0025 
       82.55        20.61        55.86        77.62        53.06        42.74 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       10.36        90.58         2.83        14.14         3.58        10.72 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       18.28         6.84        14.70        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
       19.86         8.35         9.57        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 
       25.05         5.49        20.84        27.22        22.72         0.23 
TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
       51.29        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 
       17.65        23.15        99.95        48.95        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0321 
       10.75        14.47        13.87        14.20        15.95         9.86 
TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        0.16        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        0.10         3.55        22.72        18.74        14.07        23.05 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
       10.75         0.20         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       56.84        10.65        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        90.97         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 
        2.53        28.47        14.93        10.29         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        2.60         0.39         6.44         5.46         4.96        11.84 
TCGA-06-0213 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
        0.20         0.33        18.02        10.32        11.80        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       14.96        10.29         5.52        70.52         4.67         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 
        0.16        35.01         3.22         4.47         9.63        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 
        5.42        20.94         7.43         6.35        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 
        7.86        13.58        33.90         0.76         4.90         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5411 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 
       31.50         8.35         4.54         8.98         8.55         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 
        6.12         4.54         3.91         7.76         1.45         0.49 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68        34.75       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 
       10.39         7.59         3.39        53.79         1.28        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0359 TCGA-08-0375 TCGA-08-0386 
       22.52        14.70        35.64         0.95         9.17        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 
        3.19        10.59         0.56         3.48         8.52        18.44 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 
        1.28        10.72         4.80         6.51        17.29         5.52 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
        1.61        10.39         5.95         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 TCGA-12-0775 
       24.13        18.08        28.37        12.43        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       10.62        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         3.98         9.44        25.28        13.61 
TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       59.41        25.78        11.54        10.95        11.77        34.52 
TCGA-12-5295 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
       13.08         2.01        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 
        2.24        11.24        13.74         3.25         1.35         2.89 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1043 TCGA-14-1395 
       26.33         2.04        28.90        15.95         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
        1.94        17.75         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 
        7.96        50.53        19.10        53.19         5.49         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
       26.07        16.31         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 
       18.28         6.41        11.77        21.86         8.61        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
       25.38         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 
        4.87         1.08         7.53         0.16         4.08         7.00 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
       11.28         8.02         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1799 
        5.39         5.29        10.03         9.73        31.33         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1833 TCGA-27-1834 
        7.92         2.30         4.80        16.57        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        2.53         9.17         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-5207 TCGA-28-5208 
        2.83         0.13         0.66         7.30         9.04        15.55 
TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       11.77        14.20         7.79        13.64         4.21         8.52 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        5.42        15.35        21.07         0.10        15.85        19.50 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4213 TCGA-32-5222 
        7.33         8.84        22.78        21.17        19.82        10.62 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 
        0.85        13.35         8.94         9.53         4.44        11.84 
TCGA-41-6646 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
        7.73         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        4.54         3.65         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
        2.70        11.38        17.06        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.20              0.07 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            92.61            127.56 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           10.025             9.930 
[1] "0.2 - 92.6 (10.0)" "0.1 - 127.6 (9.9)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"6Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"6Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"6Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D52V2, continuous
D52V3, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED    53  67
  6Q LOSS WILD-TYPE 165 268
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     53   67
  6Q LOSS WILD-TYPE  165  268
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE              53               165
  MALE                67               268
D52V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  6Q LOSS MUTATED                               0                   4
  6Q LOSS WILD-TYPE                            10                  14
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  6Q LOSS MUTATED                               116
  6Q LOSS WILD-TYPE                             409
D52V5, multiclass
                                 clus
vv                                6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           4                14
  UNTREATED PRIMARY (DE NOVO) GBM             116               409
D52V6, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED    84  36
  6Q LOSS WILD-TYPE 298 135
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     84   36
  6Q LOSS WILD-TYPE  298  135
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO               84               298
  YES              36               135

Clustering(53) Variable = 7P LOSS MUTATION ANALYSIS
D53V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED     2   6
  7P LOSS WILD-TYPE 106 439
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                8               545 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                6               439 
$`7P LOSS MUTATED`
TCGA-02-0015 TCGA-02-0026 TCGA-02-0432 TCGA-06-0221 TCGA-06-0410 TCGA-08-0516 
       20.61        24.59        47.11        18.02         4.67        18.44 
TCGA-14-3477 TCGA-19-0960 
        3.75         8.61 

$`7P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       20.71        82.55        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.06        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       26.99        65.00        11.67        17.65        23.15        92.61 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       10.55        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        90.97         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       28.47        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
       11.84         0.20        12.43        22.49         0.33        10.32 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       11.80        20.42        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
       70.52         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.94         7.43         6.35         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58        33.90         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.12         4.54         3.91         7.76         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.45         0.49         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        1.55         4.77         4.96        22.68        34.75         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       11.77         8.52        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        6.51        15.98        17.29         5.52        14.01        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
        1.61        10.39         5.95         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        5.39         2.89        16.50        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 
        7.96         3.39         9.86        50.53        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
        5.49         3.91         9.93        26.07        16.31         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 
       13.97         6.41        11.77        21.86         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.48         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.72        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.32         7.59         8.45         1.18         1.51         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        0.13         0.66         6.74         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55        14.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       14.20         7.79        13.64         4.21         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.35        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.83        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       12.23        20.78        14.99        15.95         7.33         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        21.17        21.14         3.68        12.59        19.82 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        10.62         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.88         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             3.75              0.07 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            47.11            127.56 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            18.23              9.90 
[1] "3.8 - 47.1 (18.2)" "0.1 - 127.6 (9.9)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-87-5896 
"7P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-87-5896 
"7P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D53V2, continuous
D53V3, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     3   5
  7P LOSS WILD-TYPE 215 330
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      3    5
  7P LOSS WILD-TYPE  215  330
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               3               215
  MALE                 5               330
D53V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  7P LOSS MUTATED                               0                   0
  7P LOSS WILD-TYPE                            10                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  7P LOSS MUTATED                                 8
  7P LOSS WILD-TYPE                             517
D53V5, multiclass
                                 clus
vv                                7P LOSS MUTATED 7P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           0                18
  UNTREATED PRIMARY (DE NOVO) GBM               8               517
D53V6, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     7   1
  7P LOSS WILD-TYPE 375 170
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      7    1
  7P LOSS WILD-TYPE  375  170
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                7               375
  YES               1               170

Clustering(54) Variable = 7Q LOSS MUTATION ANALYSIS
D54V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED     1   5
  7Q LOSS WILD-TYPE 107 440
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                6               547 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                5               440 
$`7Q LOSS MUTATED`
TCGA-02-0015 TCGA-02-0432 TCGA-06-0221 TCGA-06-0410 TCGA-08-0516 TCGA-14-3477 
       20.61        47.11        18.02         4.67        18.44         3.75 

$`7Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       20.71        82.55        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       14.50        10.55        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        90.97 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       10.32        11.80        20.42        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
        0.26        70.52         8.05         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
        5.42        20.94         7.43         6.35         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58        33.90         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83        30.64         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43        31.50        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.12         4.54         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.36         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        4.77         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        3.48        11.77         8.52        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.40         1.61        10.39         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        9.44        25.28        13.61         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.18        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        1.35         5.39         2.89        16.50        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.90        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       17.49         7.96         3.39         9.86        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       53.19         5.49         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
       12.95         4.64        25.38         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.51         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.33         8.84        22.78        21.17        21.14         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.82        10.85        10.62         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        20.88         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             3.75              0.07 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            47.11            127.56 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            18.23              9.90 
[1] "3.8 - 47.1 (18.2)" "0.1 - 127.6 (9.9)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"7Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"7Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"7Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D54V2, continuous
D54V3, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED     2   4
  7Q LOSS WILD-TYPE 216 331
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      2    4
  7Q LOSS WILD-TYPE  216  331
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE               2               216
  MALE                 4               331
D54V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  7Q LOSS MUTATED                               0                   0
  7Q LOSS WILD-TYPE                            10                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  7Q LOSS MUTATED                                 6
  7Q LOSS WILD-TYPE                             519
D54V5, multiclass
                                 clus
vv                                7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           0                18
  UNTREATED PRIMARY (DE NOVO) GBM               6               519
D54V6, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED     5   1
  7Q LOSS WILD-TYPE 377 170
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      5    1
  7Q LOSS WILD-TYPE  377  170
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                5               377
  YES               1               170

Clustering(55) Variable = 8P LOSS MUTATION ANALYSIS
D55V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED    14  45
  8P LOSS WILD-TYPE  94 400
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               59               494 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               45               400 
$`8P LOSS MUTATED`
TCGA-02-0001 TCGA-02-0025 TCGA-02-0059 TCGA-02-0060 TCGA-02-0086 TCGA-02-0106 
        9.14        42.74         9.57         6.02         8.81        11.67 
TCGA-02-0111 TCGA-02-0115 TCGA-02-0281 TCGA-02-0324 TCGA-02-0430 TCGA-02-2486 
       23.15        15.65         3.98         7.69        10.55        16.18 
TCGA-06-0159 TCGA-06-0171 TCGA-06-0195 TCGA-06-0216 TCGA-06-0410 TCGA-06-0743 
        9.44        13.02         7.04        22.49         4.67        22.29 
TCGA-06-1087 TCGA-06-2570 TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 TCGA-06-6693 
        3.58        31.50        11.21         8.35         8.81         0.49 
TCGA-08-0246 TCGA-08-0386 TCGA-08-0392 TCGA-08-0525 TCGA-12-0619 TCGA-12-0776 
        3.91        15.72         0.30        15.98        10.39         9.11 
TCGA-12-0826 TCGA-12-1098 TCGA-12-1598 TCGA-14-0736 TCGA-14-0862 TCGA-14-1034 
       27.78         3.98         9.44        15.09         2.89        15.95 
TCGA-14-1450 TCGA-14-1794 TCGA-14-1823 TCGA-15-1447 TCGA-16-0846 TCGA-16-1063 
       58.78         0.99        17.82        53.19         3.91        13.97 
TCGA-19-0960 TCGA-19-1385 TCGA-19-1786 TCGA-26-1439 TCGA-26-5136 TCGA-27-2524 
        8.61        10.75         7.13        13.87         1.22         7.59 
TCGA-28-1750 TCGA-28-2502 TCGA-28-2509 TCGA-28-2514 TCGA-28-5204 TCGA-32-4208 
        8.32         0.66         4.77         5.26         3.91        21.14 
TCGA-32-4210 TCGA-32-4719 TCGA-41-3915 TCGA-74-6584 TCGA-76-4934 
        3.68        10.85        11.84         7.46         2.53 

$`8P LOSS WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.06        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 
       57.76        16.93         3.48        26.99        65.00        17.65 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       92.61        99.95        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        9.86        10.62         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0432 TCGA-02-0440 
       25.12        10.59        12.39        14.50        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.24        16.18         3.35        16.80        12.92        15.29 
TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       15.42         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.55        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        5.46        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
       19.04         3.12         0.23         2.20         2.73        90.97 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
       11.84         0.20        12.43         0.33        18.02        10.32 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       11.80        20.42        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
       70.52         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 
        4.47         9.63         2.04        23.57         9.37        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        7.43         6.35        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       33.90         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95         6.81         5.98         4.37         0.43 
TCGA-06-5410 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        3.52         4.54         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.12         4.54         3.91         7.76         5.36 
TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        1.45         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        4.77         4.96        22.68        34.75       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 
       19.50         0.95         9.17        10.85         3.19        10.59 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.56         3.48        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 
        1.28        10.72         4.80         6.51        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.01        14.40         1.61         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       23.51        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        9.11        14.53         3.39        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.52        11.74        13.08         3.22         2.01        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        3.25         1.35         5.39        16.50        26.33         2.04 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       28.90        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       32.02        23.11         7.10         1.15        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 
       40.93         6.12        12.43         1.94        17.75         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.13        17.49         7.96         3.75         3.39 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0848 TCGA-16-0849 
        9.86        50.53        19.10         5.49         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
        3.65        18.28         6.41        11.77        21.86         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
       14.27         3.39         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
       25.38         3.48        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
        5.42        10.03         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 
        9.40        14.86         5.49         8.84         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        2.53         9.17         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2506 TCGA-28-2513 TCGA-28-5207 TCGA-28-5208 
        2.83         0.13         6.74         7.30         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4211 
       15.95         7.33         8.84        22.78        21.17        12.59 
TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       19.82        10.62         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        0.99         4.44         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 
       20.88         4.31        14.33         8.22         4.77         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.09         3.65         9.14        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.30              0.07 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            58.78            127.56 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             9.14             10.29 
[1] "0.3 - 58.8 (9.1)"   "0.1 - 127.6 (10.3)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-87-5896 
"8P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-87-5896 
"8P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-87-5896 
"8P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D55V2, continuous
D55V3, binary
                   cls
clus                  0   1
  8P LOSS MUTATED    27  32
  8P LOSS WILD-TYPE 191 303
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     27   32
  8P LOSS WILD-TYPE  191  303
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              27               191
  MALE                32               303
D55V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  8P LOSS MUTATED                               1                   1
  8P LOSS WILD-TYPE                             9                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  8P LOSS MUTATED                                57
  8P LOSS WILD-TYPE                             468
D55V5, multiclass
                                 clus
vv                                8P LOSS MUTATED 8P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 1                 9
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              57               468
D55V6, binary
                   cls
clus                  0   1
  8P LOSS MUTATED    43  16
  8P LOSS WILD-TYPE 339 155
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     43   16
  8P LOSS WILD-TYPE  339  155
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO               43               339
  YES              16               155

Clustering(56) Variable = 8Q LOSS MUTATION ANALYSIS
D56V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED     9  36
  8Q LOSS WILD-TYPE  99 409
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               45               508 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               36               409 
$`8Q LOSS MUTATED`
TCGA-02-0001 TCGA-02-0025 TCGA-02-0059 TCGA-02-0086 TCGA-02-0106 TCGA-02-0115 
        9.14        42.74         9.57         8.81        11.67        15.65 
TCGA-02-0281 TCGA-02-0324 TCGA-02-2486 TCGA-06-0159 TCGA-06-0171 TCGA-06-0195 
        3.98         7.69        16.18         9.44        13.02         7.04 
TCGA-06-0216 TCGA-06-0410 TCGA-06-0743 TCGA-06-1087 TCGA-06-5408 TCGA-06-5411 
       22.49         4.67        22.29         3.58        11.21         8.35 
TCGA-06-5413 TCGA-08-0246 TCGA-08-0386 TCGA-08-0392 TCGA-08-0525 TCGA-12-0619 
        8.81         3.91        15.72         0.30        15.98        10.39 
TCGA-12-0776 TCGA-12-0826 TCGA-12-1598 TCGA-14-0736 TCGA-14-1034 TCGA-14-1450 
        9.11        27.78         9.44        15.09        15.95        58.78 
TCGA-14-1794 TCGA-14-1823 TCGA-16-0846 TCGA-26-1439 TCGA-26-5136 TCGA-27-2524 
        0.99        17.82         3.91        13.87         1.22         7.59 
TCGA-28-1750 TCGA-28-2502 TCGA-28-2509 TCGA-28-2514 TCGA-32-4210 TCGA-32-4719 
        8.32         0.66         4.77         5.26         3.68        10.85 
TCGA-41-3915 TCGA-74-6584 TCGA-76-4934 
       11.84         7.46         2.53 

$`8Q LOSS WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.06        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
       51.29        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 TCGA-02-0258 
       17.65        23.15        92.61        99.95        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 
       16.90        17.69        10.75        14.47        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       15.95        12.23         9.86        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 
       16.80        12.92        15.29        15.42         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 
       12.79         8.65         3.19         5.46        11.80         2.56 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 
       56.84        10.65         5.29        19.04         3.12         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        90.97         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        73.84        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.29        18.28         4.67         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
        0.33        18.02        10.32        11.80        20.42        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       10.29         5.52         0.26        70.52         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       23.57         9.37        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
        5.85         5.42        20.94         7.43         6.35        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58        33.90         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83        30.64         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5412 
        5.98         4.37         0.43        31.50         3.52         4.54 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68        34.75       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0509 
        0.95         9.17        10.85         3.19        10.59         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        3.48        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
       10.72         4.80         6.51        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       14.40         1.61         5.95         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 
       28.37        12.43        53.10        43.10         5.49        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.91        20.58       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       30.54        21.63        11.97        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
       14.53         3.98         3.39        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.52        11.74        13.08         3.22         2.01        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
        2.04        28.90        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
        3.75        32.02        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 
        0.92        40.93         6.12        12.43         1.94        17.75 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.39         9.86        50.53        19.10        53.19         5.49 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
        5.42        10.03         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 
        9.40        14.86         5.49         8.84         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        2.53         9.17         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2506 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 
        2.83         0.13         6.74         7.30         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55        14.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       14.99        15.95         7.33         8.84        22.78        21.17 
TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       21.14        12.59        19.82        10.62         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 
        8.94         9.53         0.99         4.44         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 
        4.77         4.54         3.09         3.65         9.14        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.30              0.07 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            58.78            127.56 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             9.14             10.29 
[1] "0.3 - 58.8 (9.1)"   "0.1 - 127.6 (10.3)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"8Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"8Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"8Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D56V2, continuous
D56V3, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED    19  26
  8Q LOSS WILD-TYPE 199 309
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED     19   26
  8Q LOSS WILD-TYPE  199  309
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE              19               199
  MALE                26               309
D56V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  8Q LOSS MUTATED                               1                   1
  8Q LOSS WILD-TYPE                             9                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  8Q LOSS MUTATED                                43
  8Q LOSS WILD-TYPE                             482
D56V5, multiclass
                                 clus
vv                                8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 1                 9
  TREATED PRIMARY GBM                           1                17
  UNTREATED PRIMARY (DE NOVO) GBM              43               482
D56V6, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED    32  13
  8Q LOSS WILD-TYPE 350 158
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED     32   13
  8Q LOSS WILD-TYPE  350  158
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO               32               350
  YES              13               158

Clustering(57) Variable = 9P LOSS MUTATION ANALYSIS
D57V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED    40 151
  9P LOSS WILD-TYPE  68 294
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              191               362 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              151               294 
$`9P LOSS MUTATED`
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0027 TCGA-02-0048 TCGA-02-0054 
       82.55        20.61        55.86        10.36         3.19         6.54 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0064 TCGA-02-0086 TCGA-02-0099 TCGA-02-0104 
       19.86         8.35        19.73         8.81         3.48        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0114 TCGA-02-0115 TCGA-02-0258 TCGA-02-0269 
       11.67        17.65        99.95        15.65        16.54        10.75 
TCGA-02-0285 TCGA-02-0290 TCGA-02-0330 TCGA-02-0333 TCGA-02-0339 TCGA-02-0432 
       13.87        15.95        15.91         4.37        12.39        47.11 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0128 TCGA-06-0132 TCGA-06-0141 
        2.70         0.26         4.04        22.72        18.74         9.21 
TCGA-06-0145 TCGA-06-0150 TCGA-06-0154 TCGA-06-0158 TCGA-06-0162 TCGA-06-0164 
        2.33        19.46        12.79         5.46         2.56        56.84 
TCGA-06-0166 TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 TCGA-06-0177 TCGA-06-0185 
        5.29        13.02         0.23         2.73         1.97        73.84 
TCGA-06-0188 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0219 
       28.47         5.46         3.88         4.96        11.84         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0394 TCGA-06-0409 TCGA-06-0412 TCGA-06-0649 
       18.02        10.32        10.29        70.52         8.05         2.04 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 
       22.29        19.53         5.36         2.70         0.92        43.46 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0882 TCGA-06-1084 TCGA-06-1086 
       46.19         7.17        22.98         5.42         7.43         6.35 
TCGA-06-1800 TCGA-06-1802 TCGA-06-2557 TCGA-06-2561 TCGA-06-2562 TCGA-06-2565 
       26.79         7.86         1.08         9.27         2.83         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-5412 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 
        5.98         4.37         4.54         8.55         2.73         3.75 
TCGA-06-5859 TCGA-06-6389 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        4.54         7.76         0.49         7.36         8.28        12.85 
TCGA-06-6699 TCGA-08-0246 TCGA-08-0348 TCGA-08-0353 TCGA-08-0355 TCGA-08-0358 
        1.55         3.91        10.39         6.41        22.52        19.50 
TCGA-08-0375 TCGA-08-0390 TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        9.17        10.59         3.48         8.52        18.44        58.19 
TCGA-08-0525 TCGA-12-0615 TCGA-12-0654 TCGA-12-0656 TCGA-12-0670 TCGA-12-0707 
       15.98        14.01         7.17        65.88        25.97        28.37 
TCGA-12-0778 TCGA-12-0818 TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 TCGA-12-1088 
       14.83        91.73        10.62        27.78        38.76       127.56 
TCGA-12-1089 TCGA-12-1092 TCGA-12-1093 TCGA-12-1095 TCGA-12-1097 TCGA-12-1599 
        5.82        21.63        11.97        15.85        14.53        25.28 
TCGA-12-1602 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-14-0736 TCGA-14-0740 
        6.38        11.77        34.52        11.74        15.09        11.97 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0813 TCGA-14-0862 TCGA-14-1037 
        6.18        23.05         2.24         1.35         2.89        19.30 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1402 TCGA-14-1453 TCGA-14-1458 TCGA-15-1444 
        1.38         1.12        32.02         1.15         6.12        50.53 
TCGA-15-1447 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1056 
       53.19         3.91         4.27        29.00         0.82        13.35 
TCGA-16-1063 TCGA-19-0955 TCGA-19-0960 TCGA-19-0963 TCGA-19-1388 TCGA-19-1786 
       13.97        11.77         8.61        14.27        12.95         7.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2625 TCGA-19-2629 TCGA-19-5947 TCGA-19-5950 
        9.67         4.87         4.08        16.47         6.64        11.28 
TCGA-19-5952 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-26-1439 TCGA-26-1442 
       18.64         1.78         5.39         5.29        13.87        31.33 
TCGA-26-6174 TCGA-27-1833 TCGA-27-2521 TCGA-27-2526 TCGA-28-1750 TCGA-28-1756 
        2.30        18.25        10.39         2.86         8.32         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-5208 TCGA-28-5209 
        0.13         0.66         6.74         7.30        15.55        14.53 
TCGA-28-5213 TCGA-28-5220 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1991 
        9.80        10.49        15.35        21.07         0.49        16.93 
TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2572 TCGA-41-2573 
       21.14        12.59        19.82        10.85        13.35         8.94 
TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-74-6575 TCGA-74-6584 TCGA-76-4928 
        0.99         4.44         0.20        20.88         7.46         3.09 
TCGA-76-4931 TCGA-76-4935 TCGA-76-6282 TCGA-76-6657 TCGA-76-6664 
        9.14        10.78        17.06         5.03         7.76 

$`9P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 
       20.71        77.62        20.12        53.06        42.74        24.59 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       90.58         2.83        14.14         3.58        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 
       18.28         6.84        14.70        15.06        12.59         2.50 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        9.57         6.02        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0111 TCGA-02-0113 
       51.29        57.76        16.93        26.99        23.15        92.61 
TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0271 TCGA-02-0281 TCGA-02-0289 
       48.95        16.90        17.69        14.47         3.98        14.20 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 
       12.23         9.86         7.69        10.62         0.16        25.71 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 
       25.12        10.59        14.50        10.55        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.18         3.35        16.80        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 
       16.18        47.31         0.10         3.55        32.48        10.52 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0142 
       14.07        23.05        22.16        10.75         0.20         2.20 
TCGA-06-0143 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0151 
       11.74        20.09        16.70         9.80         7.82        46.59 
TCGA-06-0152 TCGA-06-0155 TCGA-06-0157 TCGA-06-0159 TCGA-06-0160 TCGA-06-0165 
       11.80         8.65         3.19         9.44        11.80        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0174 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 
       19.04         3.12         2.20        90.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
        2.53        40.37        26.33        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0213 
        4.67         7.04         2.60         0.39         6.44         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0397 
       12.43        22.49        11.80        20.42        14.96         5.52 
TCGA-06-0402 TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        0.26         4.67         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0749 TCGA-06-0877 
        4.47         9.63        23.57         9.37         2.14         5.65 
TCGA-06-0881 TCGA-06-0939 TCGA-06-1087 TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 
        5.85        20.94         3.58         8.65        13.58        33.90 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2563 TCGA-06-2564 TCGA-06-2569 TCGA-06-2570 
        0.76         4.90        30.64         5.95         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5413 TCGA-06-5414 TCGA-06-5416 
       11.21         3.52         8.35         8.81         8.98         6.71 
TCGA-06-5858 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6698 TCGA-06-6700 
        6.12         3.91         5.36         1.45         4.77         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68        34.75       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 
       13.78         7.59         3.39        53.79         1.28        15.06 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0359 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       14.70        35.64         0.95        10.85        15.72         3.19 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        0.30         0.56        11.77         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        6.51        17.29         5.52        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0657 TCGA-12-0662 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        5.95         0.10        38.17        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       18.08        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 
       14.27        24.76        18.48        23.51         8.91        20.58 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1094 TCGA-12-1096 TCGA-12-1098 TCGA-12-1099 
        6.21        30.54        11.38         9.11         3.98         3.39 
TCGA-12-1598 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
        9.44        13.61        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0781 TCGA-14-0789 
       10.95        13.08         3.22         2.01         0.95        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0817 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
       13.74         3.25         5.39        16.50        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1043 TCGA-14-1401 TCGA-14-1450 TCGA-14-1451 
       28.90        15.95         0.79         3.75        58.78        23.11 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 
        7.10        30.15         0.92        40.93        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
       17.49         7.96         3.75         3.39         9.86        19.10 
TCGA-15-1449 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-1055 TCGA-16-1060 
        5.49         9.93        26.07        16.31         9.90         3.65 
TCGA-16-1062 TCGA-16-1460 TCGA-19-0957 TCGA-19-0962 TCGA-19-0964 TCGA-19-1385 
       18.28         6.41        21.86         0.43         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 
        9.07         5.95         4.64        25.38         3.48        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2631 
        3.25         0.13         1.08         7.53         0.16         7.00 
TCGA-19-4065 TCGA-19-5951 TCGA-19-5953 TCGA-19-5954 TCGA-19-5956 TCGA-19-5960 
        7.04         8.02         4.73         7.96         6.51         5.42 
TCGA-26-1438 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
       10.03         9.73         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-27-1830 
        5.49         8.84         1.22         1.58         7.92         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.57         9.86        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2527 
       11.51        24.72        10.39        16.08         7.59        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       15.75         0.20         2.53         9.17         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-2509 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        1.18         1.51         4.77         5.26         3.91         9.04 
TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       11.77        14.20         7.79        13.64         4.21         8.52 
TCGA-28-6450 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        14.83        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 TCGA-32-5222 
        7.33         8.84        22.78        21.17         3.68        10.62 
TCGA-41-2571 TCGA-41-2575 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        0.85         9.53        11.84        11.54         7.73         3.45 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4929 
        4.31        14.33         8.22         4.77         4.54         3.65 
TCGA-76-4934 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6285 
        2.53        16.67         3.29         2.70        11.38         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-81-5910 
       20.94         4.83         0.23         9.24         7.69         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.13              0.07 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           127.56            108.82 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            10.32              9.88 
[1] "0.1 - 127.6 (10.3)" "0.1 - 108.8 (9.9)" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-87-5896 
"9P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-87-5896 
"9P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-87-5896 
"9P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D57V2, continuous
D57V3, binary
                   cls
clus                  0   1
  9P LOSS MUTATED    78 113
  9P LOSS WILD-TYPE 140 222
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     78  113
  9P LOSS WILD-TYPE  140  222
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              78               140
  MALE               113               222
D57V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  9P LOSS MUTATED                               3                   5
  9P LOSS WILD-TYPE                             7                  13
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  9P LOSS MUTATED                               183
  9P LOSS WILD-TYPE                             342
D57V5, multiclass
                                 clus
vv                                9P LOSS MUTATED 9P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 3                 7
  TREATED PRIMARY GBM                           5                13
  UNTREATED PRIMARY (DE NOVO) GBM             183               342
D57V6, binary
                   cls
clus                  0   1
  9P LOSS MUTATED   136  55
  9P LOSS WILD-TYPE 246 116
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED    136   55
  9P LOSS WILD-TYPE  246  116
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO              136               246
  YES              55               116

Clustering(58) Variable = 9Q LOSS MUTATION ANALYSIS
D58V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED    18  67
  9Q LOSS WILD-TYPE  90 378
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               85               468 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               67               378 
$`9Q LOSS MUTATED`
TCGA-02-0016 TCGA-02-0021 TCGA-02-0057 TCGA-02-0064 TCGA-02-0086 TCGA-02-0104 
       55.86        77.62        19.86        19.73         8.81        65.00 
TCGA-02-0107 TCGA-02-0269 TCGA-02-0285 TCGA-02-0330 TCGA-02-2470 TCGA-06-0128 
       17.65        10.75        13.87        15.91        12.92        22.72 
TCGA-06-0132 TCGA-06-0141 TCGA-06-0158 TCGA-06-0162 TCGA-06-0173 TCGA-06-0177 
       18.74         9.21         5.46         2.56         0.23         1.97 
TCGA-06-0188 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0237 TCGA-06-0409 
       28.47         5.46         3.88         4.96        10.32        70.52 
TCGA-06-0412 TCGA-06-0743 TCGA-06-0745 TCGA-06-0876 TCGA-06-0878 TCGA-06-1086 
        8.05        22.29         5.36        46.19         7.17         6.35 
TCGA-06-1802 TCGA-06-2557 TCGA-06-2561 TCGA-06-5412 TCGA-06-5418 TCGA-06-5859 
        7.86         1.08         9.27         4.54         2.73         4.54 
TCGA-06-6694 TCGA-08-0246 TCGA-08-0355 TCGA-08-0358 TCGA-08-0375 TCGA-08-0516 
        7.36         3.91        22.52        19.50         9.17        18.44 
TCGA-08-0517 TCGA-12-0615 TCGA-12-0707 TCGA-12-0821 TCGA-12-0826 TCGA-12-1089 
       58.19        14.01        28.37        10.62        27.78         5.82 
TCGA-12-1091 TCGA-12-1093 TCGA-12-1602 TCGA-12-3652 TCGA-12-3653 TCGA-14-0736 
       30.54        11.97         6.38        34.52        11.74        15.09 
TCGA-14-0740 TCGA-14-1395 TCGA-14-1396 TCGA-14-1453 TCGA-15-1444 TCGA-15-1447 
       11.97         1.38         1.12         1.15        50.53        53.19 
TCGA-16-0846 TCGA-16-1045 TCGA-16-1047 TCGA-19-0963 TCGA-19-1388 TCGA-19-1786 
        3.91        29.00         0.82        14.27        12.95         7.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-5950 TCGA-19-5958 TCGA-26-1439 TCGA-27-2521 
        9.67         4.87        11.28         5.39        13.87        10.39 
TCGA-28-1750 TCGA-28-1757 TCGA-28-2506 TCGA-28-2513 TCGA-28-5220 TCGA-32-1970 
        8.32         0.13         6.74         7.30        10.49        15.35 
TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2572 TCGA-74-6584 
       21.14        12.59        19.82        10.85        13.35         7.46 
TCGA-76-6282 
       17.06 

$`9Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.71        82.55        20.61        20.12        53.06        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0058 TCGA-02-0059 
       15.06        12.59         6.54         2.50         8.35         9.57 
TCGA-02-0060 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
        6.02        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0111 
       57.76        16.93         3.48        26.99        11.67        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0271 TCGA-02-0281 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       17.69        14.47         3.98        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 
        9.86         7.69        10.62         0.16        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 
       11.34         9.24        16.18         3.35        16.80        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 TCGA-06-0133 TCGA-06-0137 
        0.10         3.55        32.48        10.52        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       22.16        10.75         0.20         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0159 TCGA-06-0160 
       11.80        12.79         8.65         3.19         9.44        11.80 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.84        10.65         5.29        19.04         3.12        13.02 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.20         2.73        90.97        53.98        19.00         2.53 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       40.37        73.84        26.33        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0211 
        4.67         7.04         2.60         0.39         6.44        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 
        0.20        12.43        22.49         0.33        18.02        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 
       20.42        14.96        10.29         5.52         0.26         4.67 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        0.16        35.01        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 
        2.04        23.57         9.37        19.53         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0877 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
        0.92        43.46         5.65        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 
       20.94         7.43         3.58        26.79         8.65        13.58 
TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       33.90         0.76         4.90         2.83        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43        31.50        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        3.52         8.35         8.81         8.98         8.55         6.71 
TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        3.75         6.12         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        0.49         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68        34.75       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0356 TCGA-08-0357 TCGA-08-0359 TCGA-08-0380 
        6.41        15.06        14.70        35.64         0.95        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       11.77         8.52         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       15.98        17.29         5.52        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
        5.95         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0769 TCGA-12-0772 
       24.13         6.08         2.63        18.08        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       24.76        18.48        23.51        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1090 TCGA-12-1092 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
      127.56         6.21        21.63        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       14.53         3.98         3.39         9.44        25.28        13.61 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
       13.08         3.22         2.01         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.74         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        2.89        16.50        26.33         2.04        28.90        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
       19.30         0.79         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        7.10        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.94        17.75        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        7.13        17.49         7.96         3.75         3.39         9.86 
TCGA-15-1446 TCGA-15-1449 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
       19.10         5.49         9.93        26.07        16.31         4.27 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0964 TCGA-19-1385 
       11.77        21.86         8.61         0.43         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 
        9.07         5.95         4.64        25.38         3.48        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        3.25         0.13         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5951 TCGA-19-5952 
       16.47         7.00         7.04         6.64         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5959 TCGA-19-5960 
        4.73         7.96         1.78         6.51         5.29         5.42 
TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        2.53         9.17         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-2502 TCGA-28-2509 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        2.83         0.66         4.77         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55        14.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-1973 TCGA-32-1976 
       13.64         4.21         8.52         5.42        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 TCGA-32-5222 
        7.33         8.84        22.78        21.17         3.68        10.62 
TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
        0.85         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        20.88         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
       14.33         8.22         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       11.38         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.13              0.07 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            77.62            127.56 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            10.75              9.83 
[1] "0.1 - 77.6 (10.8)" "0.1 - 127.6 (9.8)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"9Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"9Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-87-5896 
"9Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D58V2, continuous
D58V3, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED    38  47
  9Q LOSS WILD-TYPE 180 288
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     38   47
  9Q LOSS WILD-TYPE  180  288
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE              38               180
  MALE                47               288
D58V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  9Q LOSS MUTATED                               1                   3
  9Q LOSS WILD-TYPE                             9                  15
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  9Q LOSS MUTATED                                81
  9Q LOSS WILD-TYPE                             444
D58V5, multiclass
                                 clus
vv                                9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 1                 9
  TREATED PRIMARY GBM                           3                15
  UNTREATED PRIMARY (DE NOVO) GBM              81               444
D58V6, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED    61  24
  9Q LOSS WILD-TYPE 321 147
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     61   24
  9Q LOSS WILD-TYPE  321  147
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO               61               321
  YES              24               147

Clustering(59) Variable = 10P LOSS MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    84 376
  10P LOSS WILD-TYPE  24  69
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               460                 93 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               376                 69 
$`10P LOSS MUTATED`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0014 TCGA-02-0016 TCGA-02-0021 
        4.73        18.35        10.59        82.55        55.86        77.62 
TCGA-02-0023 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       20.12        10.36         2.83        14.14         3.58        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 
       10.52        18.28         6.84         3.19        15.06        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 
        6.54         2.50        19.86         9.57        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0084 
       25.05         5.49        10.19        20.84        27.22         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 
       51.29         8.81        16.93         3.48        26.99        11.67 
TCGA-02-0107 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0269 
       17.65        92.61        15.65        48.95        16.90        10.75 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
        7.69        10.62        15.91        25.71         4.37        25.12 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       14.50        10.55        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       16.80        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 
        4.04        47.31         0.10         3.55        22.72        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0149 TCGA-06-0150 
        9.21        11.74         2.33        16.70         7.82        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        9.44         2.56        56.84         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 
       13.02         0.23         2.20         2.73         1.97        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        73.84        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 
        6.44         5.46         3.88         4.96        11.84        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       22.49         0.33        18.02        10.32        11.80        14.96 
TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0414 
       10.29         0.26        70.52         4.67         8.05        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 
        5.85         5.42        20.94         7.43         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 
        8.65         7.86        13.58         1.08         0.76         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83        30.64         5.95         6.81         5.98         4.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 
        8.55         2.73         3.75         4.54         3.91         5.36 
TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        0.49         8.28        12.85         4.77         1.55         4.77 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68        34.75         3.91         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
       10.39         7.59         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0529 
       11.77         8.52         1.28        10.72         4.80        17.29 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
       14.01        14.40         1.61        10.39         5.95         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 
        2.63        18.08        28.37        12.43        53.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
        9.11        14.83        14.27        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       30.54        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.98         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 
       30.15         0.92         0.99         1.94        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-15-0742 TCGA-15-1444 
        5.88         7.13        17.49         7.96         9.86        50.53 
TCGA-15-1446 TCGA-15-1449 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       19.10         5.49         9.93        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 TCGA-19-0957 
       13.35         3.65        18.28        13.97        11.77        21.86 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 
       12.95         4.64         3.48         7.13         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5959 
       18.64         4.73         7.96         1.78         6.51         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1799 TCGA-26-5132 
        5.42        10.03        13.87         9.73         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         7.59        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        0.13         0.66         6.74         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55        14.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       14.20         7.79        13.64         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       15.35         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        14.83        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       15.95        22.78        21.17         3.68        12.59        19.82 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        10.62         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.88         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         1.61        17.69         0.07 

$`10P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0015 TCGA-02-0024 
        9.14        23.18        35.41        20.71        20.61        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0028 TCGA-02-0047 TCGA-02-0058 TCGA-02-0060 
       42.74        24.59        90.58        14.70         8.35         6.02 
TCGA-02-0069 TCGA-02-0080 TCGA-02-0083 TCGA-02-0087 TCGA-02-0104 TCGA-02-0111 
       28.70        89.72        22.72        57.76        65.00        23.15 
TCGA-02-0114 TCGA-02-0258 TCGA-02-0266 TCGA-02-0271 TCGA-02-0326 TCGA-02-0338 
       99.95        16.54        17.69        14.47         0.16        10.59 
TCGA-02-0339 TCGA-02-0432 TCGA-02-2470 TCGA-06-0129 TCGA-06-0142 TCGA-06-0146 
       12.39        47.11        12.92        32.48         2.20        20.09 
TCGA-06-0148 TCGA-06-0160 TCGA-06-0165 TCGA-06-0176 TCGA-06-0178 TCGA-06-0213 
        9.80        11.80        10.65        90.97        53.98         0.20 
TCGA-06-0240 TCGA-06-0397 TCGA-06-0413 TCGA-06-1086 TCGA-06-1805 TCGA-06-2559 
       20.42         5.52         0.16         6.35        33.90         4.90 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5416 TCGA-06-5858 TCGA-06-6389 TCGA-06-6391 
        0.43        31.50         6.71         6.12         7.76         1.45 
TCGA-06-6694 TCGA-06-6701 TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 TCGA-08-0516 
        7.36         4.96       108.82         3.39        53.79        18.44 
TCGA-08-0517 TCGA-08-0524 TCGA-08-0525 TCGA-08-0531 TCGA-12-0773 TCGA-12-0818 
       58.19         6.51        15.98         5.52        43.10        91.73 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1092 TCGA-12-1099 TCGA-14-1396 TCGA-14-1456 
        5.82         6.21        21.63         3.39         1.12        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1821 TCGA-14-3477 TCGA-14-4157 TCGA-15-1447 
        6.12        12.43        17.75         3.75         3.39        53.19 
TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1460 TCGA-19-0960 
        3.91        26.07        16.31         4.27         6.41         8.61 
TCGA-19-1390 TCGA-19-1787 TCGA-19-5958 TCGA-26-1442 TCGA-26-1443 TCGA-27-2526 
       25.38        12.66         5.39        31.33         7.10         2.86 
TCGA-28-1755 TCGA-28-1756 TCGA-28-5218 TCGA-32-1973 TCGA-32-1991 TCGA-32-2616 
        1.51         2.83         4.21        21.07        16.93         7.33 
TCGA-32-2632 TCGA-32-4208 TCGA-76-6664 
        8.84        21.14         7.76 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.07               0.16 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            127.56             108.82 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             9.765             12.660 
[1] "0.1 - 127.6 (9.8)"  "0.2 - 108.8 (12.7)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
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  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-87-5896 
  "10P LOSS MUTATED" 
[1] "hr=" "1.8"
D59V2, continuous
D59V3, binary
                    cls
clus                   0   1
  10P LOSS MUTATED   175 285
  10P LOSS WILD-TYPE  43  50
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED    175  285
  10P LOSS WILD-TYPE   43   50
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE              175                 43
  MALE                285                 50
D59V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  10P LOSS MUTATED                               6                  10
  10P LOSS WILD-TYPE                             4                   8
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  10P LOSS MUTATED                               444
  10P LOSS WILD-TYPE                              81
D59V5, multiclass
                                 clus
vv                                10P LOSS MUTATED 10P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  6                  4
  TREATED PRIMARY GBM                           10                  8
  UNTREATED PRIMARY (DE NOVO) GBM              444                 81
D59V6, binary
                    cls
clus                   0   1
  10P LOSS MUTATED   316 144
  10P LOSS WILD-TYPE  66  27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED    316  144
  10P LOSS WILD-TYPE   66   27
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO               316                 66
  YES              144                 27

Clustering(60) Variable = 10Q LOSS MUTATION ANALYSIS
D60V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED    87 385
  10Q LOSS WILD-TYPE  21  60
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               472                 81 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               385                 60 
$`10Q LOSS MUTATED`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 
        4.73        18.35        23.18        10.59        35.41        82.55 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 
       55.86        77.62        20.12        24.59        10.36         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 
        3.19        12.59         6.54         2.50        19.86         9.57 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       19.73        26.43        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 
       27.22        22.72         0.23        51.29         8.81        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0113 TCGA-02-0115 
        3.48        26.99        11.67        17.65        92.61        15.65 
TCGA-02-0116 TCGA-02-0260 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       48.95        16.90        10.75         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 
       15.95        12.23         9.86         7.69        10.62        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 
       25.71         4.37        25.12        14.50        10.55        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 
        9.24        16.18         3.35        16.80        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       16.18         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.55        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 
       23.05        22.16        10.75         0.20         9.21        11.74 
TCGA-06-0145 TCGA-06-0147 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
        2.33        16.70         7.82        19.46        46.59        11.80 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 
        8.65         3.19         5.46         9.44         2.56        56.84 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.29        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        2.73         1.97        19.00         2.53        40.37        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
        4.96        11.84        12.43        22.49         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 
       10.32        11.80        14.96        10.29         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        4.67         8.05        35.01        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        7.43         3.58        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       33.90         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-5408 
       30.64         5.95         6.81         5.98         4.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6693 
        2.73         3.75         4.54         3.91         5.36         0.49 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-08-0244 
        8.28        12.85         4.77         1.55         4.77        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
       34.75         3.91         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
        7.59         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
        3.19        10.59         0.30         0.56         3.48        11.77 
TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 
        8.52         1.28        10.72         4.80        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        5.52        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 
        2.63        18.08        28.37        12.43        53.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
        9.11        14.83        14.27        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1091 TCGA-12-1092 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
        5.82        30.54        21.63        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
       14.53         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 
       30.15         0.92        12.43         0.99         1.94        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0848 TCGA-16-0850 
        9.86        50.53        19.10         5.49         9.93        16.31 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       13.97        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 
       10.75         9.07         5.95        12.95         4.64         3.48 
TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        7.13         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        16.47         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        1.78         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2524 TCGA-27-2526 
       11.51        24.72        10.39        10.39         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 
        7.59         8.45         1.18         1.51         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55        14.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 
       13.64         8.52        10.49         5.42        15.35         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        21.17        21.14         3.68        12.59        19.82 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        10.62         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.88         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         1.61        17.69         0.07 

$`10Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0011 TCGA-02-0015 TCGA-02-0024 TCGA-02-0025 TCGA-02-0028 
        9.14        20.71        20.61        53.06        42.74        90.58 
TCGA-02-0047 TCGA-02-0051 TCGA-02-0058 TCGA-02-0060 TCGA-02-0069 TCGA-02-0080 
       14.70        15.06         8.35         6.02        28.70        89.72 
TCGA-02-0087 TCGA-02-0104 TCGA-02-0111 TCGA-02-0114 TCGA-02-0258 TCGA-02-0266 
       57.76        65.00        23.15        99.95        16.54        17.69 
TCGA-02-0271 TCGA-02-0326 TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 TCGA-02-2470 
       14.47         0.16        10.59        12.39        47.11        12.92 
TCGA-06-0142 TCGA-06-0146 TCGA-06-0148 TCGA-06-0154 TCGA-06-0160 TCGA-06-0165 
        2.20        20.09         9.80        12.79        11.80        10.65 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0213 TCGA-06-0240 TCGA-06-0397 TCGA-06-0413 
       90.97        53.98         0.20        20.42         5.52         0.16 
TCGA-06-1086 TCGA-06-2569 TCGA-06-2570 TCGA-06-5416 TCGA-06-5858 TCGA-06-6389 
        6.35         0.43        31.50         6.71         6.12         7.76 
TCGA-06-6391 TCGA-06-6694 TCGA-06-6701 TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 
        1.45         7.36         4.96       108.82         3.39        53.79 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0524 TCGA-12-0691 TCGA-12-0773 TCGA-12-0818 
       18.44        58.19         6.51         6.08        43.10        91.73 
TCGA-12-1090 TCGA-12-1093 TCGA-12-1098 TCGA-12-1099 TCGA-14-1396 TCGA-14-1456 
        6.21        11.97         3.98         3.39         1.12        40.93 
TCGA-14-1458 TCGA-14-1821 TCGA-14-4157 TCGA-15-1447 TCGA-16-0846 TCGA-16-0849 
        6.12        17.75         3.39        53.19         3.91        26.07 
TCGA-16-0861 TCGA-16-1460 TCGA-19-0955 TCGA-19-1390 TCGA-19-1787 TCGA-19-5956 
        4.27         6.41        11.77        25.38        12.66         6.51 
TCGA-19-5958 TCGA-26-1442 TCGA-27-2523 TCGA-28-1756 TCGA-28-5218 TCGA-32-1973 
        5.39        31.33        16.08         2.83         4.21        21.07 
TCGA-32-2616 TCGA-32-2632 TCGA-76-6664 
        7.33         8.84         7.76 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.07               0.16 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            127.56             108.82 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              9.83              11.97 
[1] "0.1 - 127.6 (9.8)"  "0.2 - 108.8 (12.0)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
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  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-87-5896 
  "10Q LOSS MUTATED" 
[1] "hr=" "1.8"
D60V2, continuous
D60V3, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED   183 289
  10Q LOSS WILD-TYPE  35  46
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED    183  289
  10Q LOSS WILD-TYPE   35   46
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE              183                 35
  MALE                289                 46
D60V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  10Q LOSS MUTATED                               6                  13
  10Q LOSS WILD-TYPE                             4                   5
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  10Q LOSS MUTATED                               453
  10Q LOSS WILD-TYPE                              72
D60V5, multiclass
                                 clus
vv                                10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  6                  4
  TREATED PRIMARY GBM                           13                  5
  UNTREATED PRIMARY (DE NOVO) GBM              453                 72
D60V6, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED   327 145
  10Q LOSS WILD-TYPE  55  26
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED    327  145
  10Q LOSS WILD-TYPE   55   26
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO               327                 55
  YES              145                 26

Clustering(61) Variable = 11P LOSS MUTATION ANALYSIS
D61V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    18  78
  11P LOSS WILD-TYPE  90 367
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                96                457 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                78                367 
$`11P LOSS MUTATED`
TCGA-02-0001 TCGA-02-0010 TCGA-02-0024 TCGA-02-0033 TCGA-02-0047 TCGA-02-0048 
        9.14        35.41        53.06         2.83        14.70         3.19 
TCGA-02-0052 TCGA-02-0055 TCGA-02-0059 TCGA-02-0069 TCGA-02-0074 TCGA-02-0075 
       12.59         2.50         9.57        28.70        10.19        20.84 
TCGA-02-0084 TCGA-02-0086 TCGA-02-0087 TCGA-02-0113 TCGA-02-0114 TCGA-02-0281 
        0.23         8.81        57.76        92.61        99.95         3.98 
TCGA-02-0332 TCGA-02-0456 TCGA-02-2466 TCGA-06-0128 TCGA-06-0159 TCGA-06-0166 
       25.71         3.35        16.80        22.72         9.44         5.29 
TCGA-06-0174 TCGA-06-0177 TCGA-06-0184 TCGA-06-0192 TCGA-06-0197 TCGA-06-0216 
        2.20         1.97        40.37        18.28         2.60        22.49 
TCGA-06-0238 TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 TCGA-06-0649 TCGA-06-0686 
       11.80        70.52         4.67        35.01         2.04         9.37 
TCGA-06-0876 TCGA-06-1086 TCGA-06-1800 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
       46.19         6.35        26.79        33.90         1.08         0.76 
TCGA-06-2570 TCGA-06-5856 TCGA-06-6389 TCGA-06-6694 TCGA-08-0245 TCGA-08-0520 
       31.50         3.75         7.76         7.36        34.75        10.72 
TCGA-12-0616 TCGA-12-0619 TCGA-12-0691 TCGA-12-0772 TCGA-12-0819 TCGA-12-0822 
       14.40        10.39         6.08        53.10        24.76        23.51 
TCGA-12-1099 TCGA-12-1602 TCGA-12-3646 TCGA-12-3653 TCGA-14-0740 TCGA-14-0783 
        3.39         6.38        43.20        11.74        11.97         6.18 
TCGA-14-0817 TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 TCGA-14-1454 TCGA-14-1459 
        5.39        16.50         2.04        28.90        30.15        12.43 
TCGA-14-1794 TCGA-14-1821 TCGA-14-1823 TCGA-14-3477 TCGA-15-1447 TCGA-15-1449 
        0.99        17.75        17.82         3.75        53.19         5.49 
TCGA-16-0846 TCGA-16-0850 TCGA-16-1045 TCGA-19-1387 TCGA-19-1390 TCGA-19-1392 
        3.91        16.31        29.00         5.95        25.38         3.48 
TCGA-19-2623 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-5133 TCGA-27-1830 
        7.53         5.29         5.42        13.87        14.86         4.80 
TCGA-28-1756 TCGA-28-2509 TCGA-28-5216 TCGA-32-1976 TCGA-32-2615 TCGA-32-2632 
        2.83         4.77        13.64         0.49        15.95         8.84 
TCGA-32-4210 TCGA-32-4719 TCGA-41-3915 TCGA-74-6584 TCGA-76-4934 TCGA-76-6286 
        3.68        10.85        11.84         7.46         2.53        20.94 

$`11P LOSS WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 TCGA-02-0014 
        4.73        18.35        23.18        10.59        20.71        82.55 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 
       20.61        55.86        77.62        20.12        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       10.36        90.58        14.14         3.58        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 
       18.28         6.84        15.06         6.54        19.86         8.35 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0079 
        6.02        19.73        26.43        25.05         5.49        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       89.72        22.72        51.29        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0115 TCGA-02-0116 
       65.00        11.67        17.65        23.15        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 
       16.54        16.90        17.69        10.75        14.47        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        0.16        15.91         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0130 
        4.04        47.31         0.10         3.55        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.80         7.82        19.46        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        8.65         3.19         5.46        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 
       10.65        19.04         3.12        13.02         0.23         2.73 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 
       90.97        53.98        19.00         2.53        73.84        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 
       28.47        14.93        10.29         4.67         7.04         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0240 TCGA-06-0241 
       12.43         0.33        18.02        10.32        20.42        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 
       10.29         5.52         0.26         8.05         0.16        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 
        3.22         4.47         9.63        23.57        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0877 
        5.36         2.70         2.14         0.92        43.46         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2559 TCGA-06-2561 
        3.58         8.65         7.86        13.58         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83        30.64         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        0.43        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 
        8.98         8.55         6.71         2.73         6.12         4.54 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 
        3.91         5.36         1.45         0.49         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 
        4.77         1.55         4.77         4.96        22.68         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 
       11.77         8.52        18.44        58.19         1.28         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0618 
        6.51        15.98        17.29         5.52        14.01         1.61 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
        5.95         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 
       24.13         2.63        18.08        28.37        12.43        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 
        5.49         9.11        14.83        14.27        91.73        18.48 
TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       10.62        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 
       15.85         9.11        14.53         3.98         9.44        25.28 
TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       13.61        59.41        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       34.52        13.08         3.22         2.01        15.09         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.89        26.33        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1795 TCGA-14-1825 
        1.15         0.92        40.93         6.12         1.94         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 
        5.88         7.13        17.49         7.96         3.39         9.86 
TCGA-15-1444 TCGA-15-1446 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1047 
       50.53        19.10         9.93        26.07         4.27         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-19-1786 TCGA-19-1787 
       10.75         9.07        12.95         4.64         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 
        3.25         0.13         9.67         4.87         1.08         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        16.47         7.00         7.04         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.64         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
        5.39        10.03         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
        9.40         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        2.30        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 
        1.51         0.13         0.66         6.74         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55        14.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       14.20         7.79         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       15.35        21.07         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       14.99         7.33        22.78        21.17        21.14        12.59 
TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       19.82        10.62         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        0.99         4.44         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 
       20.88         4.31        14.33         8.22         4.77         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.09         3.65         9.14        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 
        2.70        11.38        17.06         8.32         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.23               0.07 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             99.95             127.56 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            10.555              9.860 
[1] "0.2 - 100.0 (10.6)" "0.1 - 127.6 (9.9)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-87-5896 
"11P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D61V2, continuous
D61V3, binary
                    cls
clus                   0   1
  11P LOSS MUTATED    46  50
  11P LOSS WILD-TYPE 172 285
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     46   50
  11P LOSS WILD-TYPE  172  285
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               46                172
  MALE                 50                285
D61V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  11P LOSS MUTATED                               1                   5
  11P LOSS WILD-TYPE                             9                  13
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  11P LOSS MUTATED                                90
  11P LOSS WILD-TYPE                             435
D61V5, multiclass
                                 clus
vv                                11P LOSS MUTATED 11P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            5                 13
  UNTREATED PRIMARY (DE NOVO) GBM               90                435
D61V6, binary
                    cls
clus                   0   1
  11P LOSS MUTATED    63  33
  11P LOSS WILD-TYPE 319 138
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     63   33
  11P LOSS WILD-TYPE  319  138
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                63                319
  YES               33                138

Clustering(62) Variable = 11Q LOSS MUTATION ANALYSIS
D62V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    13  78
  11Q LOSS WILD-TYPE  95 367
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                91                462 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                78                367 
$`11Q LOSS MUTATED`
TCGA-02-0001 TCGA-02-0010 TCGA-02-0024 TCGA-02-0033 TCGA-02-0048 TCGA-02-0052 
        9.14        35.41        53.06         2.83         3.19        12.59 
TCGA-02-0055 TCGA-02-0059 TCGA-02-0069 TCGA-02-0074 TCGA-02-0075 TCGA-02-0086 
        2.50         9.57        28.70        10.19        20.84         8.81 
TCGA-02-0087 TCGA-02-0111 TCGA-02-0113 TCGA-02-0281 TCGA-02-0332 TCGA-02-0339 
       57.76        23.15        92.61         3.98        25.71        12.39 
TCGA-02-0456 TCGA-06-0130 TCGA-06-0159 TCGA-06-0166 TCGA-06-0174 TCGA-06-0177 
        3.35        10.52         9.44         5.29         2.20         1.97 
TCGA-06-0184 TCGA-06-0188 TCGA-06-0190 TCGA-06-0192 TCGA-06-0195 TCGA-06-0197 
       40.37        28.47        10.29        18.28         7.04         2.60 
TCGA-06-0216 TCGA-06-0238 TCGA-06-0409 TCGA-06-0410 TCGA-06-0414 TCGA-06-0649 
       22.49        11.80        70.52         4.67        35.01         2.04 
TCGA-06-0686 TCGA-06-0876 TCGA-06-1800 TCGA-06-2557 TCGA-06-5856 TCGA-06-6389 
        9.37        46.19        26.79         1.08         3.75         7.76 
TCGA-08-0245 TCGA-08-0520 TCGA-12-0616 TCGA-12-0619 TCGA-12-0691 TCGA-12-0772 
       34.75        10.72        14.40        10.39         6.08        53.10 
TCGA-12-0819 TCGA-12-0822 TCGA-12-1099 TCGA-12-1598 TCGA-12-1602 TCGA-12-3646 
       24.76        23.51         3.39         9.44         6.38        43.20 
TCGA-12-3651 TCGA-12-3653 TCGA-14-0783 TCGA-14-0817 TCGA-14-0865 TCGA-14-0867 
       11.77        11.74         6.18         5.39        16.50         2.04 
TCGA-14-0871 TCGA-14-1454 TCGA-14-1459 TCGA-14-1794 TCGA-14-1823 TCGA-14-3477 
       28.90        30.15        12.43         0.99        17.82         3.75 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0850 TCGA-16-1045 TCGA-19-1387 TCGA-19-1390 
        5.49         3.91        16.31        29.00         5.95        25.38 
TCGA-19-1392 TCGA-19-2623 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-27-1830 
        3.48         7.53         5.29         5.42        13.87         4.80 
TCGA-28-2509 TCGA-28-5216 TCGA-32-1976 TCGA-32-1986 TCGA-32-2615 TCGA-32-2632 
        4.77        13.64         0.49        12.69        15.95         8.84 
TCGA-32-4210 TCGA-32-4719 TCGA-41-3915 TCGA-74-6584 TCGA-76-4934 TCGA-76-6286 
        3.68        10.85        11.84         7.46         2.53        20.94 
TCGA-81-5910 
        1.61 

$`11Q LOSS WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 TCGA-02-0014 
        4.73        18.35        23.18        10.59        20.71        82.55 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0026 
       20.61        55.86        77.62        20.12        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       10.36        90.58        14.14         3.58        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 
       18.28         6.84        14.70        15.06         6.54        19.86 
TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        8.35         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0089 
       27.22        89.72        22.72         0.23        51.29        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0114 
        3.48        26.99        65.00        11.67        17.65        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
       14.47        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 
        7.69        10.62         0.16        15.91         4.37        25.12 
TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       10.59        14.50        10.55        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
       16.18        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       22.72        32.48        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 
       11.80        12.79         8.65         3.19         5.46        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        2.56        56.84        10.65        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        0.23         2.73        90.97        53.98        19.00         2.53 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0194 TCGA-06-0201 TCGA-06-0206 
       73.84        26.33        14.93         4.67         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
        0.33        18.02        10.32        20.42        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 
        5.52         0.26         8.05         0.16        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        4.47         9.63        23.57        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0877 TCGA-06-0878 
        2.70         2.14         0.92        43.46         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 
        3.58         8.65         7.86        13.58        33.90         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83        30.64         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43        31.50        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 
        2.73         6.12         4.54         3.91         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.77         4.96        22.68         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       18.44        58.19         1.28         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 
       17.29         5.52        14.01         1.61         5.95         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 
       65.88         0.10        38.17        25.97        24.13         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       18.08        28.37        12.43        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0826 
       14.83        14.27        91.73        18.48        10.62        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.91        20.58       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       30.54        21.63        11.97        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 
       14.53         3.98        25.28        13.61        59.41        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.54        10.95        34.52        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       15.09        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 
       13.74         3.25         1.35         2.89        26.33        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 
       58.78        23.11         7.10         1.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        6.12         1.94        17.75         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       17.49         7.96         3.39         9.86        50.53        19.10 
TCGA-15-1447 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1047 TCGA-16-1055 
       53.19         9.93        26.07         4.27         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        9.07        12.95         4.64         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 
        0.13         9.67         4.87         1.08         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        2.30        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 
        1.51         2.83         0.13         0.66         6.74         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
        9.80        14.20         7.79         4.21         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        5.42        15.35        21.07         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       14.99         7.33        22.78        21.17        21.14        12.59 
TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       19.82        10.62         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        0.99         4.44         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 
       20.88         4.31        14.33         8.22         4.77         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.09         3.65         9.14        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 
        2.70        11.38        17.06         8.32         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5911 TCGA-87-5896 
        0.23         9.24         7.69         7.76        17.69         0.07 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.49               0.07 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             92.61             127.56 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             10.29               9.88 
[1] "0.5 - 92.6 (10.3)" "0.1 - 127.6 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
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  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
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  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
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  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" 
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  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-87-5896 
"11Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D62V2, continuous
D62V3, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED    40  51
  11Q LOSS WILD-TYPE 178 284
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     40   51
  11Q LOSS WILD-TYPE  178  284
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE               40                178
  MALE                 51                284
D62V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  11Q LOSS MUTATED                               1                   3
  11Q LOSS WILD-TYPE                             9                  15
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  11Q LOSS MUTATED                                87
  11Q LOSS WILD-TYPE                             438
D62V5, multiclass
                                 clus
vv                                11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            3                 15
  UNTREATED PRIMARY (DE NOVO) GBM               87                438
D62V6, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED    57  34
  11Q LOSS WILD-TYPE 325 137
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     57   34
  11Q LOSS WILD-TYPE  325  137
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                57                325
  YES               34                137

Clustering(63) Variable = 12P LOSS MUTATION ANALYSIS
D63V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED    10  50
  12P LOSS WILD-TYPE  98 395
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                60                493 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                50                395 
$`12P LOSS MUTATED`
TCGA-02-0026 TCGA-02-0034 TCGA-02-0055 TCGA-02-0075 TCGA-02-0102 TCGA-02-0104 
       24.59        14.14         2.50        20.84        26.99        65.00 
TCGA-02-0113 TCGA-06-0147 TCGA-06-0149 TCGA-06-0159 TCGA-06-0177 TCGA-06-0182 
       92.61        16.70         7.82         9.44         1.97         2.53 
TCGA-06-0190 TCGA-06-0195 TCGA-06-0197 TCGA-06-0221 TCGA-06-0237 TCGA-06-0410 
       10.29         7.04         2.60        18.02        10.32         4.67 
TCGA-06-0414 TCGA-06-0686 TCGA-06-2557 TCGA-06-5856 TCGA-06-6390 TCGA-08-0245 
       35.01         9.37         1.08         3.75         5.36        34.75 
TCGA-08-0349 TCGA-08-0386 TCGA-08-0510 TCGA-08-0514 TCGA-12-0619 TCGA-12-0670 
        7.59        15.72         3.48         8.52        10.39        25.97 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3646 TCGA-14-0783 TCGA-14-0817 TCGA-14-0867 
       13.61         6.38        43.20         6.18         5.39         2.04 
TCGA-14-0871 TCGA-14-1451 TCGA-14-1794 TCGA-14-3477 TCGA-16-0849 TCGA-16-0850 
       28.90        23.11         0.99         3.75        26.07        16.31 
TCGA-16-1055 TCGA-19-0960 TCGA-19-1385 TCGA-19-1388 TCGA-19-1390 TCGA-19-2623 
        9.90         8.61        10.75        12.95        25.38         7.53 
TCGA-19-2624 TCGA-19-4065 TCGA-19-5960 TCGA-26-1438 TCGA-26-5132 TCGA-26-5136 
        0.16         7.04         5.42        10.03         9.40         1.22 
TCGA-27-1836 TCGA-28-5204 TCGA-32-1978 TCGA-32-2494 TCGA-32-4210 TCGA-76-6193 
       30.05         3.91        15.85        20.78         3.68         2.70 

$`12P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 
       53.06        42.74        10.36        90.58         2.83         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.06        12.59         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       10.19        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0106 TCGA-02-0107 
        8.81        57.76        16.93         3.48        11.67        17.65 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.15        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
        2.33        20.09         9.80        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 
       12.79         8.65         3.19         5.46        11.80         2.56 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.84        10.65         5.29        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 
        0.23         2.20         2.73        90.97        53.98        19.00 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 
       40.37        73.84        26.33        28.47        14.93        18.28 
TCGA-06-0194 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        4.67         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0238 
       11.84         0.20        12.43        22.49         0.33        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        8.05         0.16        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        2.04        23.57        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58        33.90 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43        31.50        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        6.71         2.73         6.12         4.54         3.91         7.76 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.45         0.49         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 
        1.55         4.77         4.96        22.68         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0350 TCGA-08-0351 
        1.74         4.34        13.78        10.39         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 
       19.50         0.95         9.17        10.85         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        0.30         0.56        11.77        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.01        14.40         1.61         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       25.28        59.41        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.52        11.74        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 
        3.25         1.35         2.89        16.50        26.33        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.02 
TCGA-14-1450 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       58.78         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
        6.12        12.43         1.94        17.75        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 
        5.88         7.13        17.49         7.96         3.39         9.86 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
       50.53        19.10        53.19         5.49         3.91         9.93 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
        4.27        29.00         0.82        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 
       13.97         6.41        11.77        21.86         0.43        14.27 
TCGA-19-0964 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 
        3.39         9.07         5.95         4.64         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08        16.47         7.00         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
        5.29        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
       14.86         5.49         8.84         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.17         8.32         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        2.83         0.13         0.66         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        5.26         9.04        15.55        14.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       14.20         7.79        13.64         4.21         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 
        5.42        15.35        21.07         0.49         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.83        16.93        12.23 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       14.99        15.95         7.33         8.84        22.78        21.17 
TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
       21.14        12.59        19.82        10.85        10.62         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        20.88         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.16               0.07 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             92.61             127.56 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              9.42              10.29 
[1] "0.2 - 92.6 (9.4)"   "0.1 - 127.6 (10.3)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-87-5896 
"12P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D63V2, continuous
D63V3, binary
                    cls
clus                   0   1
  12P LOSS MUTATED    21  39
  12P LOSS WILD-TYPE 197 296
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     21   39
  12P LOSS WILD-TYPE  197  296
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE               21                197
  MALE                 39                296
D63V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  12P LOSS MUTATED                               1                   2
  12P LOSS WILD-TYPE                             9                  16
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  12P LOSS MUTATED                                57
  12P LOSS WILD-TYPE                             468
D63V5, multiclass
                                 clus
vv                                12P LOSS MUTATED 12P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            2                 16
  UNTREATED PRIMARY (DE NOVO) GBM               57                468
D63V6, binary
                    cls
clus                   0   1
  12P LOSS MUTATED    42  18
  12P LOSS WILD-TYPE 340 153
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     42   18
  12P LOSS WILD-TYPE  340  153
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                42                340
  YES               18                153

Clustering(64) Variable = 12Q LOSS MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED    11  46
  12Q LOSS WILD-TYPE  97 399
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                57                496 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                46                399 
$`12Q LOSS MUTATED`
TCGA-02-0034 TCGA-02-0055 TCGA-02-0075 TCGA-02-0084 TCGA-02-0102 TCGA-02-0113 
       14.14         2.50        20.84         0.23        26.99        92.61 
TCGA-02-2466 TCGA-06-0146 TCGA-06-0147 TCGA-06-0149 TCGA-06-0159 TCGA-06-0177 
       16.80        20.09        16.70         7.82         9.44         1.97 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0190 TCGA-06-0197 TCGA-06-0221 TCGA-06-0237 
        2.53        40.37        10.29         2.60        18.02        10.32 
TCGA-06-0410 TCGA-06-0414 TCGA-06-0686 TCGA-06-2557 TCGA-06-5856 TCGA-06-6389 
        4.67        35.01         9.37         1.08         3.75         7.76 
TCGA-06-6390 TCGA-08-0245 TCGA-08-0349 TCGA-08-0386 TCGA-08-0514 TCGA-12-0619 
        5.36        34.75         7.59        15.72         8.52        10.39 
TCGA-12-0670 TCGA-12-1600 TCGA-12-1602 TCGA-12-3646 TCGA-14-0740 TCGA-14-0783 
       25.97        13.61         6.38        43.20        11.97         6.18 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1451 TCGA-14-1794 
        1.35         5.39         2.04        28.90        23.11         0.99 
TCGA-14-3477 TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-19-1388 TCGA-19-1390 
        3.75        53.19        26.07        16.31        12.95        25.38 
TCGA-19-2623 TCGA-19-2624 TCGA-19-4065 TCGA-19-5960 TCGA-26-1438 TCGA-26-5132 
        7.53         0.16         7.04         5.42        10.03         9.40 
TCGA-26-5136 TCGA-32-1978 TCGA-32-4210 
        1.22        15.85         3.68 

$`12Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 
        3.19        15.06        12.59         6.54        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 
        5.49        10.19        27.22        89.72        22.72        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0104 TCGA-02-0106 
        8.81        57.76        16.93         3.48        65.00        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       17.65        23.15        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        0.16        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
       16.18         3.35        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        2.33         9.80        19.46        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        8.65         3.19         5.46        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0185 
        2.20         2.73        90.97        53.98        19.00        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       26.33        28.47        14.93        18.28         4.67         7.04 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0238 TCGA-06-0240 
        0.20        12.43        22.49         0.33        11.80        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 
       14.96        10.29         5.52         0.26        70.52         8.05 
TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        0.16        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
       23.57        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
        5.85         5.42        20.94         7.43         6.35         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 
       26.79         8.65         7.86        13.58        33.90         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83        30.64         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43        31.50        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6391 TCGA-06-6693 
        2.73         6.12         4.54         3.91         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       13.78        10.39         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
        9.17        10.85         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        3.48        11.77        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       14.40         1.61         5.95         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       38.17        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
        9.11        14.53         3.98         3.39         9.44        25.28 
TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       59.41        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       11.74        13.08         3.22         2.01        15.09         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0862 
       23.05         2.24        11.24        13.74         3.25         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       16.50        26.33        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1453 
        1.12         3.75        32.02        58.78         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 
       30.15         0.92        40.93         6.12        12.43         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 
        7.96         3.39         9.86        50.53        19.10         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
        3.91         9.93         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
        9.07         5.95         4.64         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2625 
        3.25         0.13         9.67         4.87         1.08         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
       16.47         7.00         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5133 
       13.87         9.73        31.33         7.10         9.37        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        5.49         8.84         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.57         9.86        18.25        33.14        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.17         8.32         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        2.83         0.13         0.66         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
        9.80        14.20         7.79        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.83        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       12.23        20.78        14.99        15.95         7.33         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       22.78        21.17        21.14        12.59        19.82        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.62         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       20.88         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.16               0.07 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             92.61             127.56 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              9.44              10.06 
[1] "0.2 - 92.6 (9.4)"   "0.1 - 127.6 (10.1)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
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        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-87-5896 
"12Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D64V2, continuous
D64V3, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED    21  36
  12Q LOSS WILD-TYPE 197 299
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED     21   36
  12Q LOSS WILD-TYPE  197  299
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE               21                197
  MALE                 36                299
D64V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  12Q LOSS MUTATED                               1                   3
  12Q LOSS WILD-TYPE                             9                  15
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  12Q LOSS MUTATED                                53
  12Q LOSS WILD-TYPE                             472
D64V5, multiclass
                                 clus
vv                                12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            3                 15
  UNTREATED PRIMARY (DE NOVO) GBM               53                472
D64V6, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED    37  20
  12Q LOSS WILD-TYPE 345 151
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED     37   20
  12Q LOSS WILD-TYPE  345  151
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                37                345
  YES               20                151

Clustering(65) Variable = 13Q LOSS MUTATION ANALYSIS
D65V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED    32 145
  13Q LOSS WILD-TYPE  76 300
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               177                376 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               145                300 
$`13Q LOSS MUTATED`
TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0033 TCGA-02-0034 
       18.35        23.18        35.41        20.71         2.83        14.14 
TCGA-02-0039 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0059 
       10.52        15.06        12.59         6.54         2.50         9.57 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0075 TCGA-02-0079 TCGA-02-0099 
       19.73        26.43        28.70        20.84        27.22         3.48 
TCGA-02-0106 TCGA-02-0113 TCGA-02-0115 TCGA-02-0325 TCGA-02-0330 TCGA-02-0339 
       11.67        92.61        15.65        10.62        15.91        12.39 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0456 TCGA-02-2483 TCGA-06-0122 TCGA-06-0128 
       11.34         9.24         3.35        15.29         0.26        22.72 
TCGA-06-0130 TCGA-06-0138 TCGA-06-0140 TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 
       10.52        22.16         0.20        16.70         7.82        11.80 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 
        5.46         9.44         2.56        56.84         5.29        19.04 
TCGA-06-0177 TCGA-06-0182 TCGA-06-0184 TCGA-06-0188 TCGA-06-0192 TCGA-06-0195 
        1.97         2.53        40.37        28.47        18.28         7.04 
TCGA-06-0197 TCGA-06-0206 TCGA-06-0209 TCGA-06-0214 TCGA-06-0219 TCGA-06-0402 
        2.60         6.44         3.88        12.43         0.33         0.26 
TCGA-06-0410 TCGA-06-0414 TCGA-06-0644 TCGA-06-0648 TCGA-06-0649 TCGA-06-0745 
        4.67        35.01        12.33         9.63         2.04         5.36 
TCGA-06-0875 TCGA-06-0881 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       43.46         5.85         7.86        13.58        33.90         1.08 
TCGA-06-2558 TCGA-06-2567 TCGA-06-5408 TCGA-06-5412 TCGA-06-5414 TCGA-06-5416 
        0.76         4.37        11.21         4.54         8.98         6.71 
TCGA-06-5856 TCGA-06-5859 TCGA-06-6389 TCGA-06-6694 TCGA-08-0245 TCGA-08-0246 
        3.75         4.54         7.76         7.36        34.75         3.91 
TCGA-08-0347 TCGA-08-0349 TCGA-08-0354 TCGA-08-0359 TCGA-08-0389 TCGA-08-0392 
       13.78         7.59        15.06         0.95         3.19         0.30 
TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-12-0615 TCGA-12-0662 
       11.77        18.44        58.19        10.72        14.01        38.17 
TCGA-12-0691 TCGA-12-0769 TCGA-12-0772 TCGA-12-0776 TCGA-12-0819 TCGA-12-0826 
        6.08        12.43        53.10         9.11        24.76        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1091 TCGA-12-1092 
       38.76         8.91        20.58       127.56        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 
       11.97        11.38         9.11        14.53         3.39         9.44 
TCGA-12-3644 TCGA-12-3646 TCGA-12-5295 TCGA-14-0736 TCGA-14-0740 TCGA-14-0783 
       59.41        43.20        13.08        15.09        11.97         6.18 
TCGA-14-0787 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-1034 TCGA-14-1396 
        2.24         3.25         2.89        16.50        15.95         1.12 
TCGA-14-1451 TCGA-14-1453 TCGA-14-1454 TCGA-14-1456 TCGA-14-1458 TCGA-14-1823 
       23.11         1.15        30.15        40.93         6.12        17.82 
TCGA-14-1825 TCGA-14-3477 TCGA-15-0742 TCGA-15-1444 TCGA-15-1447 TCGA-15-1449 
        7.63         3.75         9.86        50.53        53.19         5.49 
TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-16-1045 TCGA-19-1385 TCGA-19-1387 
        3.91        26.07        16.31        29.00        10.75         5.95 
TCGA-19-1392 TCGA-19-2621 TCGA-19-2625 TCGA-19-2629 TCGA-19-4065 TCGA-19-5947 
        3.48         1.08         4.08        16.47         7.04         6.64 
TCGA-26-1439 TCGA-26-5133 TCGA-26-6173 TCGA-27-1830 TCGA-27-1834 TCGA-27-2519 
       13.87        14.86         7.92         4.80        33.14        10.39 
TCGA-27-2521 TCGA-28-1746 TCGA-28-1750 TCGA-28-2502 TCGA-28-2509 TCGA-28-5215 
       10.39         0.20         8.32         0.66         4.77         7.79 
TCGA-28-5216 TCGA-28-5219 TCGA-32-1976 TCGA-32-1987 TCGA-32-2616 TCGA-32-2634 
       13.64         8.52         0.49        14.83         7.33        22.78 
TCGA-32-4210 TCGA-32-4719 TCGA-41-2573 TCGA-41-3392 TCGA-41-3915 TCGA-41-4097 
        3.68        10.85         8.94         0.99        11.84         0.20 
TCGA-74-6584 TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 TCGA-76-6193 TCGA-76-6285 
        7.46         3.65         2.53        10.78         2.70         8.32 
TCGA-76-6286 TCGA-76-6661 TCGA-81-5911 
       20.94         0.23        17.69 

$`13Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 
        9.14         4.73        10.59        82.55        20.61        55.86 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 
       77.62        20.12        53.06        42.74        24.59        10.36 
TCGA-02-0028 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
       90.58         3.58        10.72        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0070 TCGA-02-0071 
        3.19        19.86         8.35         6.02        25.05         5.49 
TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       10.19        89.72        22.72         0.23        51.29         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 
       57.76        16.93        26.99        65.00        17.65        23.15 
TCGA-02-0114 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       99.95        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
        9.86         7.69         0.16        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0451 TCGA-02-2466 
       10.59        14.50        10.55        47.11        16.18        16.80 
TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0124 TCGA-06-0125 
       12.92        15.42        16.18         2.70         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
        0.10         3.55        32.48        18.74        14.07        23.05 
TCGA-06-0139 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
       10.75         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        9.80        19.46        46.59        12.79         8.65         3.19 
TCGA-06-0160 TCGA-06-0165 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
       11.80        10.65         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0185 TCGA-06-0187 
        2.73        90.97        53.98        19.00        73.84        26.33 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0201 TCGA-06-0208 TCGA-06-0210 
       14.93        10.29         4.67         0.39         5.46         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       11.84         0.20        22.49        18.02        10.32        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 
       20.42        14.96        10.29         5.52        70.52         8.05 
TCGA-06-0413 TCGA-06-0645 TCGA-06-0646 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        0.16         3.22         4.47        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 
       19.53         2.70         2.14         0.92        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
        7.17        22.98         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
        3.58        26.79         8.65         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95         6.81         5.98         0.43        31.50 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5413 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 
        3.52         8.35         8.81         8.55         2.73         6.12 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 
        3.91         5.36         1.45         0.49         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0344 
        4.77         1.55         4.77         4.96        22.68       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
        1.74         4.34        10.39         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 
        6.41        22.52        14.70        35.64        19.50         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 
       10.85        15.72        10.59         0.56         3.48         8.52 
TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
        1.28         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.40         1.61        10.39         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
        0.10        25.97        24.13         2.63        18.08        28.37 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 
       43.10         5.49        14.83        14.27        91.73        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-1089 TCGA-12-1090 TCGA-12-1095 TCGA-12-1098 
       10.62        23.51         5.82         6.21        15.85         3.98 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       25.28        13.61         6.38        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5299 TCGA-12-5301 TCGA-14-0781 
       11.77        34.52        11.74         3.22         2.01         0.95 
TCGA-14-0786 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0866 
       23.05        11.24        13.74         1.35         5.39        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 
        2.04        28.90        19.30         0.79         1.38         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1455 TCGA-14-1459 TCGA-14-1794 
       32.02        58.78         7.10         0.92        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
        1.94        17.75         5.88         7.13        17.49         7.96 
TCGA-14-4157 TCGA-15-1446 TCGA-16-0848 TCGA-16-0861 TCGA-16-1047 TCGA-16-1055 
        3.39        19.10         9.93         4.27         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1386 
       21.86         8.61         0.43        14.27         3.39         9.07 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
       12.95         4.64        25.38         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2631 
        0.13         9.67         4.87         7.53         0.16         7.00 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1440 
        6.51         5.39         5.29         5.42        10.03         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 
       31.33         7.10         9.37         9.40         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6174 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        1.22         1.58         2.30        16.57         9.86        18.25 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2523 
       21.30        30.05        14.04        11.51        24.72        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 
        7.59         2.86        14.40        15.75         2.53         9.17 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        6.74         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5218 TCGA-28-5220 
       14.53        11.77         9.80        14.20         4.21        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        5.42        15.35        21.07         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       14.99        15.95         8.84        21.17        21.14        12.59 
TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 TCGA-41-3393 
       19.82        10.62         0.85        13.35         9.53         4.44 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        20.88         4.31        14.33 
TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-6191 
        8.22         4.77         4.54         3.09         9.14        16.67 
TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6656 TCGA-76-6657 TCGA-76-6662 
        3.29        11.38        17.06         4.83         5.03         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 
        7.69         7.76         1.61         0.07 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.20               0.07 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            127.56             108.82 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             10.39               9.88 
[1] "0.2 - 127.6 (10.4)" "0.1 - 108.8 (9.9)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
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        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-87-5896 
"13Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D65V2, continuous
D65V3, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED    70 107
  13Q LOSS WILD-TYPE 148 228
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     70  107
  13Q LOSS WILD-TYPE  148  228
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               70                148
  MALE                107                228
D65V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  13Q LOSS MUTATED                               3                   4
  13Q LOSS WILD-TYPE                             7                  14
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  13Q LOSS MUTATED                               170
  13Q LOSS WILD-TYPE                             355
D65V5, multiclass
                                 clus
vv                                13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  3                  7
  TREATED PRIMARY GBM                            4                 14
  UNTREATED PRIMARY (DE NOVO) GBM              170                355
D65V6, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED   118  59
  13Q LOSS WILD-TYPE 264 112
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED    118   59
  13Q LOSS WILD-TYPE  264  112
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO               118                264
  YES               59                112

Clustering(66) Variable = 14Q LOSS MUTATION ANALYSIS
D66V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    32 112
  14Q LOSS WILD-TYPE  76 333
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               144                409 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               112                333 
$`14Q LOSS MUTATED`
TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0016 TCGA-02-0024 TCGA-02-0025 
       23.18        35.41        20.71        55.86        53.06        42.74 
TCGA-02-0034 TCGA-02-0039 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0055 
       14.14        10.52        14.70         3.19        15.06         2.50 
TCGA-02-0060 TCGA-02-0074 TCGA-02-0086 TCGA-02-0099 TCGA-02-0107 TCGA-02-0113 
        6.02        10.19         8.81         3.48        17.65        92.61 
TCGA-02-0281 TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 TCGA-02-0446 
        3.98         7.69        10.62        15.91        25.71         9.24 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
        3.35        16.80        15.29        22.72        32.48        10.52 
TCGA-06-0138 TCGA-06-0141 TCGA-06-0143 TCGA-06-0146 TCGA-06-0162 TCGA-06-0166 
       22.16         9.21        11.74        20.09         2.56         5.29 
TCGA-06-0171 TCGA-06-0188 TCGA-06-0192 TCGA-06-0194 TCGA-06-0216 TCGA-06-0219 
       13.02        28.47        18.28         4.67        22.49         0.33 
TCGA-06-0221 TCGA-06-0241 TCGA-06-0409 TCGA-06-0410 TCGA-06-0644 TCGA-06-0646 
       18.02        14.96        70.52         4.67        12.33         4.47 
TCGA-06-0649 TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        2.04         5.36         2.14         0.92        43.46        46.19 
TCGA-06-0878 TCGA-06-1084 TCGA-06-2557 TCGA-06-2561 TCGA-06-5411 TCGA-06-5416 
        7.17         7.43         1.08         9.27         8.35         6.71 
TCGA-06-5856 TCGA-06-5859 TCGA-06-6389 TCGA-06-6390 TCGA-06-6697 TCGA-06-6699 
        3.75         4.54         7.76         5.36        12.85         1.55 
TCGA-08-0245 TCGA-08-0380 TCGA-08-0390 TCGA-08-0392 TCGA-08-0512 TCGA-08-0520 
       34.75        10.85        10.59         0.30        11.77        10.72 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0654 TCGA-12-0662 TCGA-12-0692 TCGA-12-0821 
       14.01        14.40         7.17        38.17         2.63        10.62 
TCGA-12-0827 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1092 TCGA-12-1096 
       38.76       127.56         5.82        30.54        21.63         9.11 
TCGA-12-1598 TCGA-12-1602 TCGA-12-3653 TCGA-12-5295 TCGA-14-0736 TCGA-14-0783 
        9.44         6.38        11.74        13.08        15.09         6.18 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-1396 TCGA-14-1455 
        1.35         5.39         2.89        16.50         1.12         0.92 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-3477 TCGA-15-1447 TCGA-16-0848 
       17.82         7.63         7.13         3.75        53.19         9.93 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1389 TCGA-19-1390 TCGA-19-1791 TCGA-19-2623 
        4.27        29.00         4.64        25.38         0.13         7.53 
TCGA-19-2629 TCGA-19-5947 TCGA-19-5956 TCGA-19-5960 TCGA-26-1439 TCGA-26-1440 
       16.47         6.64         6.51         5.42        13.87         9.73 
TCGA-26-5133 TCGA-26-5134 TCGA-27-1832 TCGA-27-1834 TCGA-27-2519 TCGA-27-2527 
       14.86         5.49         9.86        33.14        10.39        14.40 
TCGA-28-1750 TCGA-28-1756 TCGA-28-2506 TCGA-28-2509 TCGA-28-2514 TCGA-28-5207 
        8.32         2.83         6.74         4.77         5.26         9.04 
TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 TCGA-28-5220 TCGA-32-1976 TCGA-32-1980 
        9.80         7.79        13.64        10.49         0.49         1.18 
TCGA-32-2615 TCGA-32-2634 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-4097 
       15.95        22.78         8.94         9.53         0.99         0.20 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4934 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
        3.09         3.65         2.53         2.70        17.06         8.32 

$`14Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 
        9.14         4.73        18.35        10.59        82.55        20.61 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       77.62        20.12        24.59        10.36        90.58         2.83 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0052 TCGA-02-0054 
        3.58        10.72        18.28         6.84        12.59         6.54 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
       19.86         8.35         9.57        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0104 
        0.23        51.29        57.76        16.93        26.99        65.00 
TCGA-02-0106 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       11.67        23.15        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 
       16.90        17.69        10.75        14.47        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0326 TCGA-02-0333 TCGA-02-0337 
       15.95        12.23         9.86         0.16         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0451 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       16.18        12.92        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0132 TCGA-06-0133 
        4.04        47.31         0.10         3.55        18.74        14.07 
TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0142 TCGA-06-0145 TCGA-06-0147 
       23.05        10.75         0.20         2.20         2.33        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.80         7.82        19.46        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 
        8.65         3.19         5.46         9.44        11.80        56.84 
TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       10.65        19.04         3.12         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       90.97         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0195 TCGA-06-0197 
       73.84        26.33        14.93        10.29         7.04         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0394 
        0.20        12.43        10.32        11.80        20.42        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 
        5.52         0.26         8.05         0.16        35.01         3.22 
TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 
        9.63        23.57         9.37        22.29        19.53         2.70 
TCGA-06-0877 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 
        5.65        22.98         5.85         5.42        20.94         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58        33.90 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        0.76         4.90         2.83        30.64         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43        31.50        11.21         3.52 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 
        4.54         8.81         8.98         8.55         2.73         6.12 
TCGA-06-6388 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6698 
        3.91         1.45         0.49         7.36         8.28         4.77 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.77         4.96        22.68         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0386 TCGA-08-0389 TCGA-08-0509 
       19.50         0.95         9.17        15.72         3.19         0.56 
TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 
        3.48         8.52        18.44        58.19         1.28         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0618 TCGA-12-0619 
        6.51        15.98        17.29         5.52         1.61        10.39 
TCGA-12-0620 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
        5.95        65.88         0.10        25.97        24.13         6.08 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1090 TCGA-12-1093 
       23.51        27.78         8.91        20.58         6.21        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 
       11.38        15.85        14.53         3.98         3.39        25.28 
TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       13.61        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       11.77        34.52         3.22         2.01        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0866 
       23.05         2.24        11.24        13.74         3.25        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
       30.15        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1827 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 
       17.75         5.88        17.49         7.96         3.39         9.86 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 
       50.53        19.10         5.49         3.91        26.07        16.31 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1392 
        3.39        10.75         9.07         5.95        12.95         3.48 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        7.13        12.66         3.25         9.67         4.87         1.08 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 
        0.16         4.08         7.00         7.04        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.64         4.73         7.96         1.78         5.39         5.29 
TCGA-26-1438 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 
       10.03        31.33         7.10         9.37         9.40         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       18.25        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         7.59         2.86        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        2.53         9.17         7.59         8.45         1.18         1.51 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 
        0.13         0.66         7.30         3.91        15.55        14.53 
TCGA-28-5211 TCGA-28-5214 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 
       11.77        14.20         4.21         8.52         5.42        15.35 
TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 
       21.07         0.10        15.85        19.50         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 
       14.83        16.93        12.23        20.78        14.99         7.33 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
        8.84        21.17        21.14         3.68        12.59        19.82 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-3393 TCGA-41-3915 
       10.85        10.62         0.85        13.35         4.44        11.84 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        20.88         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4931 TCGA-76-4935 
        8.22         7.46         4.77         4.54         9.14        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       16.67         3.29        11.38        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.13               0.07 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            127.56             108.82 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             9.485             10.360 
[1] "0.1 - 127.6 (9.5)"  "0.1 - 108.8 (10.4)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-87-5896 
"14Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D66V2, continuous
D66V3, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED    59  85
  14Q LOSS WILD-TYPE 159 250
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     59   85
  14Q LOSS WILD-TYPE  159  250
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE               59                159
  MALE                 85                250
D66V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  14Q LOSS MUTATED                               0                   6
  14Q LOSS WILD-TYPE                            10                  12
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  14Q LOSS MUTATED                               138
  14Q LOSS WILD-TYPE                             387
D66V5, multiclass
                                 clus
vv                                14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            6                 12
  UNTREATED PRIMARY (DE NOVO) GBM              138                387
D66V6, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED   102  42
  14Q LOSS WILD-TYPE 280 129
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED    102   42
  14Q LOSS WILD-TYPE  280  129
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO               102                280
  YES               42                129

Clustering(67) Variable = 15Q LOSS MUTATION ANALYSIS
D67V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    18  79
  15Q LOSS WILD-TYPE  90 366
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                97                456 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                79                366 
$`15Q LOSS MUTATED`
TCGA-02-0003 TCGA-02-0034 TCGA-02-0047 TCGA-02-0048 TCGA-02-0054 TCGA-02-0074 
        4.73        14.14        14.70         3.19         6.54        10.19 
TCGA-02-0079 TCGA-02-0084 TCGA-02-0087 TCGA-02-0113 TCGA-02-0115 TCGA-02-0258 
       27.22         0.23        57.76        92.61        15.65        16.54 
TCGA-02-0269 TCGA-02-0281 TCGA-02-0324 TCGA-06-0124 TCGA-06-0128 TCGA-06-0129 
       10.75         3.98         7.69         4.04        22.72        32.48 
TCGA-06-0174 TCGA-06-0188 TCGA-06-0192 TCGA-06-0209 TCGA-06-0213 TCGA-06-0216 
        2.20        28.47        18.28         3.88         0.20        22.49 
TCGA-06-0237 TCGA-06-0402 TCGA-06-0410 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       10.32         0.26         4.67         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0875 TCGA-06-1801 TCGA-06-2557 TCGA-06-2558 TCGA-06-5416 
        2.04        43.46         8.65         1.08         0.76         6.71 
TCGA-06-5856 TCGA-06-6694 TCGA-08-0246 TCGA-08-0344 TCGA-08-0348 TCGA-08-0359 
        3.75         7.36         3.91       108.82        10.39         0.95 
TCGA-08-0386 TCGA-12-0618 TCGA-12-0619 TCGA-12-1088 TCGA-12-1096 TCGA-12-1099 
       15.72         1.61        10.39       127.56         9.11         3.39 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3646 TCGA-14-0783 TCGA-14-0817 TCGA-14-0867 
       13.61         6.38        43.20         6.18         5.39         2.04 
TCGA-14-1794 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
        0.99        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-1045 TCGA-19-1385 TCGA-19-1387 TCGA-19-1390 TCGA-19-1392 
       16.31        29.00        10.75         5.95        25.38         3.48 
TCGA-19-2629 TCGA-19-5955 TCGA-19-5956 TCGA-26-1438 TCGA-26-1439 TCGA-26-6174 
       16.47         1.78         6.51        10.03        13.87         2.30 
TCGA-27-1830 TCGA-27-1834 TCGA-27-2519 TCGA-27-2524 TCGA-28-1746 TCGA-28-1750 
        4.80        33.14        10.39         7.59         0.20         8.32 
TCGA-28-1756 TCGA-28-5215 TCGA-28-5219 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        2.83         7.79         8.52        15.35        21.07         0.49 
TCGA-32-2616 TCGA-32-2634 TCGA-32-4210 TCGA-32-4211 TCGA-32-4719 TCGA-41-2573 
        7.33        22.78         3.68        12.59        10.85         8.94 
TCGA-41-3915 TCGA-41-5651 TCGA-76-4929 TCGA-76-4935 TCGA-76-6191 TCGA-76-6285 
       11.84        11.54         3.65        10.78        16.67         8.32 
TCGA-76-6286 
       20.94 

$`15Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        9.14        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 
       42.74        24.59        10.36        90.58         2.83         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0052 
       10.72        10.52        18.28         6.84        15.06        12.59 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
        2.50        19.86         8.35         9.57         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0080 
       26.43        28.70        25.05         5.49        20.84        89.72 
TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       22.72        51.29         8.81        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0116 
       65.00        11.67        17.65        23.15        99.95        48.95 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.90        17.69        14.47        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
       12.23         9.86        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
       47.31         0.10         3.55        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 
        5.29        19.04         3.12        13.02         0.23         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       90.97         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 
       73.84        26.33        14.93        10.29         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        2.60         0.39         6.44         5.46         4.96        11.84 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       12.43         0.33        18.02        11.80        20.42        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
       10.29         5.52        70.52         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
       12.33        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         2.14         0.92        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2559 
        3.58        26.79         7.86        13.58        33.90         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 
        4.54         8.81         8.98         8.55         2.73         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0349 
       22.68        34.75         1.74         4.34        13.78         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 
       14.70        35.64        19.50         9.17        10.85         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       18.44        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0620 
       15.98        17.29         5.52        14.01        14.40         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
        8.91        20.58         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 
       11.97        11.38        15.85        14.53         3.98         9.44 
TCGA-12-1599 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       25.28        59.41        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.52        11.74        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 
        3.25         1.35         2.89        16.50        26.33        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 
        0.92        40.93         6.12        12.43         1.94        17.75 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-16-0861 
        3.75         3.39         9.86        50.53        19.10         4.27 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-19-1786 TCGA-19-1787 
        3.39         9.07        12.95         4.64         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        0.16         4.08         7.00         7.04         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5958 TCGA-19-5959 
        8.02        18.64         4.73         7.96         5.39         5.29 
TCGA-19-5960 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
        5.42         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.57         9.86        18.25        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       11.51        24.72        10.39        16.08         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
       15.75         2.53         9.17         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        1.51         0.13         0.66         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-28-5220 TCGA-28-6450 
        9.80        14.20        13.64         4.21        10.49         5.42 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 
        8.84        21.17        21.14        19.82        10.62         0.85 
TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-6646 
       13.35         9.53         0.99         4.44         0.20         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.88         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 TCGA-76-6192 
        4.77         4.54         3.09         9.14         2.53         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
        2.70        11.38        17.06         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.20               0.07 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            127.56              99.95 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              8.65              10.44 
[1] "0.2 - 127.6 (8.7)"  "0.1 - 100.0 (10.4)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
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  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
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  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
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  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-87-5896 
"15Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D67V2, continuous
D67V3, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED    42  55
  15Q LOSS WILD-TYPE 176 280
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     42   55
  15Q LOSS WILD-TYPE  176  280
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE               42                176
  MALE                 55                280
D67V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  15Q LOSS MUTATED                               0                   2
  15Q LOSS WILD-TYPE                            10                  16
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  15Q LOSS MUTATED                                95
  15Q LOSS WILD-TYPE                             430
D67V5, multiclass
                                 clus
vv                                15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            2                 16
  UNTREATED PRIMARY (DE NOVO) GBM               95                430
D67V6, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED    60  37
  15Q LOSS WILD-TYPE 322 134
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     60   37
  15Q LOSS WILD-TYPE  322  134
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                60                322
  YES               37                134

Clustering(68) Variable = 16P LOSS MUTATION ANALYSIS
D68V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED    10  51
  16P LOSS WILD-TYPE  98 394
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                61                492 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                51                394 
$`16P LOSS MUTATED`
TCGA-02-0009 TCGA-02-0025 TCGA-02-0052 TCGA-02-0055 TCGA-02-0074 TCGA-02-0258 
       10.59        42.74        12.59         2.50        10.19        16.54 
TCGA-02-0281 TCGA-02-0456 TCGA-02-2486 TCGA-06-0132 TCGA-06-0164 TCGA-06-0168 
        3.98         3.35        16.18        18.74        56.84        19.04 
TCGA-06-0171 TCGA-06-0177 TCGA-06-0214 TCGA-06-0216 TCGA-06-0221 TCGA-06-0394 
       13.02         1.97        12.43        22.49        18.02        10.29 
TCGA-06-0414 TCGA-06-0645 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0879 
       35.01         3.22         9.37        22.29        19.53        22.98 
TCGA-06-1087 TCGA-06-2557 TCGA-06-2569 TCGA-06-5859 TCGA-06-6389 TCGA-06-6698 
        3.58         1.08         0.43         4.54         7.76         4.77 
TCGA-06-6700 TCGA-08-0353 TCGA-08-0392 TCGA-08-0509 TCGA-08-0514 TCGA-12-0619 
        4.77         6.41         0.30         0.56         8.52        10.39 
TCGA-12-0776 TCGA-12-0826 TCGA-12-1099 TCGA-12-1600 TCGA-12-3653 TCGA-14-0812 
        9.11        27.78         3.39        13.61        11.74         3.25 
TCGA-14-0813 TCGA-14-0871 TCGA-14-1823 TCGA-19-1392 TCGA-19-5953 TCGA-19-5955 
        1.35        28.90        17.82         3.48         4.73         1.78 
TCGA-19-5956 TCGA-27-1835 TCGA-27-2521 TCGA-27-2524 TCGA-28-1750 TCGA-28-5204 
        6.51        21.30        10.39         7.59         8.32         3.91 
TCGA-28-5216 TCGA-32-1978 TCGA-32-1980 TCGA-32-4210 TCGA-41-3915 TCGA-76-4925 
       13.64        15.85         1.18         3.68        11.84         4.77 
TCGA-76-4928 
        3.09 

$`16P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 
        9.14         4.73        18.35        23.18        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
       15.06         6.54        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 
       19.73        26.43        28.70        25.05         5.49        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       27.22        89.72        22.72         0.23        51.29         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 
       57.76        16.93         3.48        26.99        65.00        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       17.65        23.15        92.61        99.95        15.65        48.95 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 
       16.90        17.69        10.75        14.47        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 
       16.80        12.92        15.29        15.42         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       10.52        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.80         7.82        19.46        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
        8.65         3.19         5.46         9.44        11.80         2.56 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       10.65         5.29         3.12         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
       90.97        53.98        19.00         2.53        40.37        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        4.96        11.84         0.20         0.33        10.32        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       20.42        14.96         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        8.05         0.16        12.33         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       23.57         5.36         2.70         2.14         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.19         5.65         7.17         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        7.43         6.35        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       33.90         0.76         4.90         9.27         2.83        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 
        5.95         6.81         5.98         4.37        31.50        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6390 
        6.71         2.73         3.75         6.12         3.91         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 
        1.45         0.49         7.36         8.28        12.85         1.55 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.96        22.68        34.75         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        1.28        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        3.48        11.77        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       14.40         1.61         5.95         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 
       28.37        12.43        53.10        43.10         5.49        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.91        20.58       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       30.54        21.63        11.97        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 
       14.53         3.98         9.44        25.28         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0817 
        6.18        23.05         2.24        11.24        13.74         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 
        2.89        16.50        26.33         2.04        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 
        6.12        12.43         0.99         1.94        17.75         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.13        17.49         7.96         3.75         3.39 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
        9.86        50.53        19.10        53.19         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 
        7.04         6.64        11.28         8.02        18.64         7.96 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        5.39         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 
       16.57         9.86        18.25        33.14        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       11.51        24.72        10.39        16.08         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       15.75         0.20         2.53         9.17         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        4.77         7.30         5.26         9.04        15.55        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 
       11.77         9.80        14.20         7.79         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
       19.50         4.67        12.69        14.83        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       20.78        14.99        15.95         7.33         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.17        21.14        12.59        19.82        10.85        10.62 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        20.88         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4929 TCGA-76-4931 
       14.33         8.22         7.46         4.54         3.65         9.14 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.30               0.07 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             56.84             127.56 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              9.11              10.16 
[1] "0.3 - 56.8 (9.1)"   "0.1 - 127.6 (10.2)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" 
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        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-87-5896 
"16P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D68V2, continuous
D68V3, binary
                    cls
clus                   0   1
  16P LOSS MUTATED    23  38
  16P LOSS WILD-TYPE 195 297
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     23   38
  16P LOSS WILD-TYPE  195  297
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE               23                195
  MALE                 38                297
D68V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  16P LOSS MUTATED                               0                   0
  16P LOSS WILD-TYPE                            10                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  16P LOSS MUTATED                                61
  16P LOSS WILD-TYPE                             464
D68V5, multiclass
                                 clus
vv                                16P LOSS MUTATED 16P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            0                 18
  UNTREATED PRIMARY (DE NOVO) GBM               61                464
D68V6, binary
                    cls
clus                   0   1
  16P LOSS MUTATED    36  25
  16P LOSS WILD-TYPE 346 146
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     36   25
  16P LOSS WILD-TYPE  346  146
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                36                346
  YES               25                146

Clustering(69) Variable = 16Q LOSS MUTATION ANALYSIS
D69V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    11  68
  16Q LOSS WILD-TYPE  97 377
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                79                474 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                68                377 
$`16Q LOSS MUTATED`
TCGA-02-0009 TCGA-02-0052 TCGA-02-0055 TCGA-02-0074 TCGA-02-0114 TCGA-02-0258 
       10.59        12.59         2.50        10.19        99.95        16.54 
TCGA-02-0281 TCGA-02-0321 TCGA-02-0337 TCGA-02-0456 TCGA-02-2486 TCGA-06-0132 
        3.98         9.86        25.12         3.35        16.18        18.74 
TCGA-06-0164 TCGA-06-0168 TCGA-06-0171 TCGA-06-0177 TCGA-06-0214 TCGA-06-0216 
       56.84        19.04        13.02         1.97        12.43        22.49 
TCGA-06-0221 TCGA-06-0394 TCGA-06-0414 TCGA-06-0645 TCGA-06-0686 TCGA-06-0743 
       18.02        10.29        35.01         3.22         9.37        22.29 
TCGA-06-0744 TCGA-06-0749 TCGA-06-0879 TCGA-06-0882 TCGA-06-1087 TCGA-06-2557 
       19.53         2.14        22.98         5.42         3.58         1.08 
TCGA-06-2569 TCGA-06-5418 TCGA-06-5859 TCGA-06-6389 TCGA-06-6693 TCGA-06-6698 
        0.43         2.73         4.54         7.76         0.49         4.77 
TCGA-06-6700 TCGA-08-0353 TCGA-08-0392 TCGA-08-0509 TCGA-08-0520 TCGA-08-0525 
        4.77         6.41         0.30         0.56        10.72        15.98 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0654 TCGA-12-0692 TCGA-12-0826 TCGA-12-1099 
        1.61        10.39         7.17         2.63        27.78         3.39 
TCGA-12-1600 TCGA-12-3653 TCGA-12-5295 TCGA-12-5301 TCGA-14-0736 TCGA-14-0812 
       13.61        11.74        13.08         2.01        15.09         3.25 
TCGA-14-0813 TCGA-14-0862 TCGA-14-0871 TCGA-14-1823 TCGA-16-1045 TCGA-19-1389 
        1.35         2.89        28.90        17.82        29.00         4.64 
TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 TCGA-27-1832 TCGA-27-2521 TCGA-27-2524 
        4.73         1.78         6.51         9.86        10.39         7.59 
TCGA-28-1750 TCGA-28-1755 TCGA-28-5204 TCGA-28-5216 TCGA-32-1973 TCGA-32-1978 
        8.32         1.51         3.91        13.64        21.07        15.85 
TCGA-32-1980 TCGA-32-1987 TCGA-32-2494 TCGA-32-4210 TCGA-41-3915 TCGA-74-6578 
        1.18        14.83        20.78         3.68        11.84        14.33 
TCGA-76-4928 
        3.09 

$`16Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 
        9.14         4.73        18.35        23.18        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
        3.19        15.06         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 
       11.67        17.65        23.15        92.61        15.65        48.95 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 
       16.90        17.69        10.75        14.47        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       15.95        12.23         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
       25.71         4.37        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 
       47.11        11.34         9.24        16.18        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.29        15.42         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0133 
        0.10         3.55        22.72        32.48        10.52        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 TCGA-06-0166 
        5.46         9.44        11.80         2.56        10.65         5.29 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 
        3.12         0.23         2.20         2.73        90.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       19.00         2.53        40.37        73.84        26.33        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       14.93        10.29        18.28         4.67         7.04         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
        0.20         0.33        10.32        11.80        20.42        14.96 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0745 
       12.33         4.47         9.63         2.04        23.57         5.36 
TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0881 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 
        5.85        20.94         7.43         6.35        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
        7.86        13.58        33.90         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83        30.64         5.95         6.81         5.98         4.37 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 
        8.98         8.55         6.71         3.75         6.12         3.91 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 
        5.36         1.45         7.36         8.28        12.85         1.55 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.96        22.68        34.75         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        1.28        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        3.48        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        4.80         6.51        17.29         5.52        14.01        14.40 
TCGA-12-0620 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        5.95        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        6.08        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       18.48        10.62        23.51        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 
       11.38        15.85         9.11        14.53         3.98         9.44 
TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       25.28         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5299 TCGA-14-0740 TCGA-14-0781 
       10.95        11.77        34.52         3.22        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0817 
        6.18        23.05         2.24        11.24        13.74         5.39 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       16.50        26.33         2.04        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.94        17.75         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        7.13        17.49         7.96         3.75         3.39         9.86 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
       50.53        19.10        53.19         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       26.07        16.31         4.27         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
        5.95        12.95        25.38         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 TCGA-19-5958 TCGA-19-5959 
       11.28         8.02        18.64         7.96         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1833 
        1.58         7.92         2.30         4.80        16.57        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1756 
        2.53         9.17         7.59         8.45         1.18         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        0.13         0.66         6.74         4.77         7.30         5.26 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55        14.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
        7.79         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.49         0.10        19.50         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       12.23        14.99        15.95         7.33         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.17        21.14        12.59        19.82        10.85        10.62 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        20.88         4.31 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4929 TCGA-76-4931 
        8.22         7.46         4.77         4.54         3.65         9.14 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.30               0.07 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             99.95             127.56 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              9.86              10.16 
[1] "0.3 - 100.0 (9.9)"  "0.1 - 127.6 (10.2)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
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  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
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"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
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"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
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  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
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  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
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  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-87-5896 
"16Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D69V2, continuous
D69V3, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED    31  48
  16Q LOSS WILD-TYPE 187 287
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     31   48
  16Q LOSS WILD-TYPE  187  287
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE               31                187
  MALE                 48                287
D69V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  16Q LOSS MUTATED                               0                   1
  16Q LOSS WILD-TYPE                            10                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  16Q LOSS MUTATED                                78
  16Q LOSS WILD-TYPE                             447
D69V5, multiclass
                                 clus
vv                                16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            1                 17
  UNTREATED PRIMARY (DE NOVO) GBM               78                447
D69V6, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED    47  32
  16Q LOSS WILD-TYPE 335 139
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     47   32
  16Q LOSS WILD-TYPE  335  139
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                47                335
  YES               32                139

Clustering(70) Variable = 17P LOSS MUTATION ANALYSIS
D70V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED    11  52
  17P LOSS WILD-TYPE  97 393
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                63                490 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                52                393 
$`17P LOSS MUTATED`
TCGA-02-0001 TCGA-02-0033 TCGA-02-0051 TCGA-02-0055 TCGA-02-0059 TCGA-02-0069 
        9.14         2.83        15.06         2.50         9.57        28.70 
TCGA-02-0079 TCGA-02-0086 TCGA-02-0104 TCGA-02-0106 TCGA-02-0113 TCGA-02-0258 
       27.22         8.81        65.00        11.67        92.61        16.54 
TCGA-02-0269 TCGA-06-0130 TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 TCGA-06-0159 
       10.75        10.52        16.70         7.82        11.80         9.44 
TCGA-06-0177 TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
        1.97        40.37        26.33        28.47        14.93        10.29 
TCGA-06-0192 TCGA-06-0197 TCGA-06-0410 TCGA-06-0644 TCGA-06-2561 TCGA-06-5408 
       18.28         2.60         4.67        12.33         9.27        11.21 
TCGA-08-0245 TCGA-08-0353 TCGA-08-0386 TCGA-08-0390 TCGA-12-0619 TCGA-12-0772 
       34.75         6.41        15.72        10.59        10.39        53.10 
TCGA-12-0826 TCGA-12-1098 TCGA-12-3653 TCGA-14-0871 TCGA-14-1396 TCGA-14-1453 
       27.78         3.98        11.74        28.90         1.12         1.15 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-19-0960 TCGA-19-2623 TCGA-19-4065 
       53.19         5.49         3.91         8.61         7.53         7.04 
TCGA-26-1442 TCGA-26-5133 TCGA-27-1835 TCGA-28-2509 TCGA-28-5215 TCGA-32-1976 
       31.33        14.86        21.30         4.77         7.79         0.49 
TCGA-32-2491 TCGA-41-2573 TCGA-41-3392 TCGA-41-3915 TCGA-41-5651 TCGA-76-4925 
       12.23         8.94         0.99        11.84        11.54         4.77 
TCGA-76-4934 TCGA-76-6285 TCGA-76-6662 
        2.53         8.32         9.24 

$`17P LOSS WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0034 TCGA-02-0037 
       42.74        24.59        10.36        90.58        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 
       12.59         6.54        19.86         8.35         6.02        19.73 
TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 
       26.43        25.05         5.49        10.19        20.84        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       22.72         0.23        51.29        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       26.99        17.65        23.15        99.95        15.65        48.95 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       16.90        17.69        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       22.72        32.48        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
       20.09         9.80        19.46        46.59        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        3.19         5.46        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.29        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 
        2.73        90.97        53.98        19.00         2.53        73.84 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        4.67         7.04         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       18.02        10.32        11.80        20.42        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        5.52         0.26        70.52         8.05         0.16        35.01 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
        5.42        20.94         7.43         6.35         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58        33.90         1.08         0.76 
TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        4.90         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        4.37         0.43        31.50         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.77         4.96        22.68         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        1.28        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0392 TCGA-08-0509 
        0.95         9.17        10.85         3.19         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        3.48        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.01        14.40         1.61         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       18.08        28.37        12.43        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       23.51        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         3.39         9.44        25.28        13.61 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.38        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       11.77        34.52        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.74         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       26.33         2.04        15.95        19.30         0.79         1.38 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 
        3.75        32.02        58.78        23.11         7.10        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
        7.96         3.75         3.39         9.86        50.53        19.10 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       11.77        21.86         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        9.07         5.95        12.95         4.64        25.38         3.48 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 
        1.08         0.16         4.08        16.47         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 
        9.73         7.10         9.37         9.40         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
        9.86        18.25        33.14        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         6.74         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 
       15.55        14.53        11.77         9.80        14.20        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       14.83        16.93        20.78        14.99        15.95         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84        22.78        21.17        21.14         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 
       19.82        10.85        10.62         0.85        13.35         9.53 
TCGA-41-3393 TCGA-41-4097 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        4.44         0.20         7.73         3.45        20.88         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
       14.33         8.22         7.46         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        9.14        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6663 
       17.06        20.94         4.83         5.03         0.23         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.49               0.07 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             92.61             127.56 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             10.52               9.86 
[1] "0.5 - 92.6 (10.5)" "0.1 - 127.6 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-87-5896 
"17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-87-5896 
"17P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D70V2, continuous
D70V3, binary
                    cls
clus                   0   1
  17P LOSS MUTATED    28  35
  17P LOSS WILD-TYPE 190 300
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     28   35
  17P LOSS WILD-TYPE  190  300
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE               28                190
  MALE                 35                300
D70V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  17P LOSS MUTATED                               1                   1
  17P LOSS WILD-TYPE                             9                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  17P LOSS MUTATED                                61
  17P LOSS WILD-TYPE                             464
D70V5, multiclass
                                 clus
vv                                17P LOSS MUTATED 17P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            1                 17
  UNTREATED PRIMARY (DE NOVO) GBM               61                464
D70V6, binary
                    cls
clus                   0   1
  17P LOSS MUTATED    39  24
  17P LOSS WILD-TYPE 343 147
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     39   24
  17P LOSS WILD-TYPE  343  147
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                39                343
  YES               24                147

Clustering(71) Variable = 17Q LOSS MUTATION ANALYSIS
D71V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED     5  36
  17Q LOSS WILD-TYPE 103 409
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                41                512 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                36                409 
$`17Q LOSS MUTATED`
TCGA-02-0001 TCGA-02-0033 TCGA-02-0051 TCGA-02-0055 TCGA-02-0059 TCGA-02-0079 
        9.14         2.83        15.06         2.50         9.57        27.22 
TCGA-02-0106 TCGA-02-0113 TCGA-02-0258 TCGA-02-0269 TCGA-06-0130 TCGA-06-0147 
       11.67        92.61        16.54        10.75        10.52        16.70 
TCGA-06-0149 TCGA-06-0152 TCGA-06-0159 TCGA-06-0177 TCGA-06-0184 TCGA-06-0187 
        7.82        11.80         9.44         1.97        40.37        26.33 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0197 TCGA-06-0644 TCGA-06-5408 
       14.93        10.29        18.28         2.60        12.33        11.21 
TCGA-08-0353 TCGA-08-0386 TCGA-12-0772 TCGA-12-0826 TCGA-12-1098 TCGA-12-3653 
        6.41        15.72        53.10        27.78         3.98        11.74 
TCGA-14-0871 TCGA-14-1453 TCGA-15-1447 TCGA-19-2623 TCGA-19-4065 TCGA-28-2509 
       28.90         1.15        53.19         7.53         7.04         4.77 
TCGA-32-2491 TCGA-41-3392 TCGA-41-5651 TCGA-76-4934 TCGA-76-6285 
       12.23         0.99        11.54         2.53         8.32 

$`17Q LOSS WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0034 TCGA-02-0037 
       42.74        24.59        10.36        90.58        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 
       12.59         6.54        19.86         8.35         6.02        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       26.43        28.70        25.05         5.49        10.19        20.84 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 
       16.93         3.48        26.99        65.00        17.65        23.15 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0271 
       99.95        15.65        48.95        16.90        17.69        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.69        10.62         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 
       47.31         0.10         3.55        22.72        32.48        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.07        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0148 TCGA-06-0150 
        2.20        11.74         2.33        20.09         9.80        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 
       46.59        12.79         8.65         3.19         5.46        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 
       13.02         0.23         2.20         2.73        90.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0188 TCGA-06-0194 TCGA-06-0195 
       19.00         2.53        73.84        28.47         4.67         7.04 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
        0.20        12.43        22.49         0.33        18.02        10.32 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       11.80        20.42        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 
       70.52         4.67         8.05         0.16        35.01         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       46.19         5.65         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.94         7.43         6.35         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58        33.90         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83        30.64         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        4.37         0.43        31.50         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
       53.79         1.28        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 
       19.50         0.95         9.17        10.85         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.30         0.56         3.48        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
        5.95         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 
       24.76        18.48        10.62        23.51        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 
       11.97        11.38        15.85         9.11        14.53         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        9.44        25.28        13.61         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 
       25.78        11.54        10.95        11.77        34.52        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 
        5.39         2.89        16.50        26.33         2.04        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       58.78        23.11         7.10        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.12        12.43         0.99         1.94        17.75        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
        3.39         9.86        50.53        19.10         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         1.08         0.16         4.08        16.47         7.00 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        1.78         6.51         5.39         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       14.83        16.93        20.78        14.99        15.95         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84        22.78        21.17        21.14         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.82        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-74-6573 
        9.53         4.44        11.84         0.20         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       20.88         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         3.65         9.14        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 
        3.29         2.70        11.38        17.06        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.99               0.07 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             92.61             127.56 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             11.21               9.86 
[1] "1.0 - 92.6 (11.2)" "0.1 - 127.6 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
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"17Q LOSS WILD-TYPE" 
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  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-87-5896 
"17Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D71V2, continuous
D71V3, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED    18  23
  17Q LOSS WILD-TYPE 200 312
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED     18   23
  17Q LOSS WILD-TYPE  200  312
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE               18                200
  MALE                 23                312
D71V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  17Q LOSS MUTATED                               1                   1
  17Q LOSS WILD-TYPE                             9                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  17Q LOSS MUTATED                                39
  17Q LOSS WILD-TYPE                             486
D71V5, multiclass
                                 clus
vv                                17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            1                 17
  UNTREATED PRIMARY (DE NOVO) GBM               39                486
D71V6, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED    22  19
  17Q LOSS WILD-TYPE 360 152
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED     22   19
  17Q LOSS WILD-TYPE  360  152
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                22                360
  YES               19                152

Clustering(72) Variable = 18P LOSS MUTATION ANALYSIS
D72V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    16  52
  18P LOSS WILD-TYPE  92 393
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                68                485 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                52                393 
$`18P LOSS MUTATED`
TCGA-02-0006 TCGA-02-0010 TCGA-02-0011 TCGA-02-0034 TCGA-02-0075 TCGA-02-0079 
       18.35        35.41        20.71        14.14        20.84        27.22 
TCGA-02-0106 TCGA-02-0111 TCGA-02-0113 TCGA-02-0324 TCGA-02-2470 TCGA-06-0129 
       11.67        23.15        92.61         7.69        12.92        32.48 
TCGA-06-0151 TCGA-06-0171 TCGA-06-0173 TCGA-06-0206 TCGA-06-0213 TCGA-06-0216 
       46.59        13.02         0.23         6.44         0.20        22.49 
TCGA-06-0237 TCGA-06-0648 TCGA-06-0649 TCGA-06-0876 TCGA-06-1086 TCGA-06-1800 
       10.32         9.63         2.04        46.19         6.35        26.79 
TCGA-06-5408 TCGA-06-5859 TCGA-06-6694 TCGA-06-6695 TCGA-08-0245 TCGA-08-0350 
       11.21         4.54         7.36         8.28        34.75         3.39 
TCGA-08-0386 TCGA-08-0525 TCGA-12-0776 TCGA-12-0826 TCGA-12-1088 TCGA-12-1096 
       15.72        15.98         9.11        27.78       127.56         9.11 
TCGA-14-0812 TCGA-14-0817 TCGA-14-1453 TCGA-14-4157 TCGA-16-0846 TCGA-16-0850 
        3.25         5.39         1.15         3.39         3.91        16.31 
TCGA-19-1390 TCGA-19-4065 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-5133 
       25.38         7.04         5.42        10.03        13.87        14.86 
TCGA-27-1830 TCGA-27-1834 TCGA-27-1838 TCGA-28-1750 TCGA-28-2514 TCGA-28-5207 
        4.80        33.14        11.51         8.32         5.26         9.04 
TCGA-28-5213 TCGA-28-5216 TCGA-32-1976 TCGA-32-2491 TCGA-32-2634 TCGA-32-4210 
        9.80        13.64         0.49        12.23        22.78         3.68 
TCGA-41-3392 TCGA-74-6575 TCGA-76-4925 TCGA-76-4929 TCGA-76-6191 TCGA-76-6285 
        0.99        20.88         4.77         3.65        16.67         8.32 
TCGA-76-6286 TCGA-81-5911 
       20.94        17.69 

$`18P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 
        9.14         4.73        23.18        10.59        82.55        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 
       55.86        77.62        20.12        53.06        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       10.36        90.58         2.83         3.58        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 
       18.28         6.84        14.70         3.19        15.06        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
        6.54         2.50        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0114 
       16.93         3.48        26.99        65.00        17.65        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        9.86        10.62         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 
       11.34         9.24        16.18         3.35        16.80        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        0.10         3.55        22.72        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       19.04         3.12         2.20         2.73        90.97         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       28.47        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        2.60         0.39         5.46         3.88         4.96        11.84 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       12.43         0.33        18.02        11.80        20.42        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.29         5.52         0.26        70.52         4.67         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0650 
        0.16        35.01        12.33         3.22         4.47        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92        43.46         5.65         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 
        5.42        20.94         7.43         3.58         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58        33.90         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83        30.64         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        0.43        31.50         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6697 
        3.91         7.76         5.36         1.45         0.49        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 
        4.77         1.55         4.77         4.96        22.68         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 
       35.64        19.50         0.95         9.17        10.85         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       18.44        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
        5.95         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       53.10        43.10         5.49        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 
       24.76        18.48        10.62        23.51        38.76         8.91 
TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
       20.58         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       11.38        15.85        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0862 
       23.05         2.24        11.24        13.74         1.35         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       23.11         7.10        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.94        17.75        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-15-0742 
        5.88         7.13        17.49         7.96         3.75         9.86 
TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 TCGA-16-0849 
       50.53        19.10        53.19         5.49         9.93        26.07 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
       12.95         4.64         3.48         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08        16.47         7.00         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
        5.29         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.57         9.86        18.25        21.30        30.05        14.04 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 
       14.40        15.75         0.20         2.53         9.17         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 
        6.74         4.77         7.30         3.91        15.55        14.53 
TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       11.77        14.20         7.79         4.21         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        5.42        15.35        21.07         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 
        1.18         4.67        12.69        14.83        16.93        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 
       14.99        15.95         7.33         8.84        21.17        21.14 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.82        10.85        10.62         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        8.94         9.53         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        7.73         3.45         4.31        14.33         8.22         7.46 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6192 
        4.54         3.09         9.14         2.53        10.78         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
        2.70        11.38        17.06         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 
        9.24         7.69         7.76         1.61         0.07 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.20               0.07 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            127.56             108.82 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             11.36               9.86 
[1] "0.2 - 127.6 (11.4)" "0.1 - 108.8 (9.9)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-87-5896 
"18P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D72V2, continuous
D72V3, binary
                    cls
clus                   0   1
  18P LOSS MUTATED    25  43
  18P LOSS WILD-TYPE 193 292
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     25   43
  18P LOSS WILD-TYPE  193  292
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               25                193
  MALE                 43                292
D72V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  18P LOSS MUTATED                               1                   3
  18P LOSS WILD-TYPE                             9                  15
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  18P LOSS MUTATED                                64
  18P LOSS WILD-TYPE                             461
D72V5, multiclass
                                 clus
vv                                18P LOSS MUTATED 18P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            3                 15
  UNTREATED PRIMARY (DE NOVO) GBM               64                461
D72V6, binary
                    cls
clus                   0   1
  18P LOSS MUTATED    48  20
  18P LOSS WILD-TYPE 334 151
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     48   20
  18P LOSS WILD-TYPE  334  151
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                48                334
  YES               20                151

Clustering(73) Variable = 18Q LOSS MUTATION ANALYSIS
D73V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED    13  47
  18Q LOSS WILD-TYPE  95 398
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                60                493 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                47                398 
$`18Q LOSS MUTATED`
TCGA-02-0006 TCGA-02-0011 TCGA-02-0075 TCGA-02-0079 TCGA-02-0106 TCGA-02-0111 
       18.35        20.71        20.84        27.22        11.67        23.15 
TCGA-02-0113 TCGA-02-0324 TCGA-06-0129 TCGA-06-0151 TCGA-06-0173 TCGA-06-0206 
       92.61         7.69        32.48        46.59         0.23         6.44 
TCGA-06-0213 TCGA-06-0216 TCGA-06-0237 TCGA-06-0648 TCGA-06-0649 TCGA-06-0749 
        0.20        22.49        10.32         9.63         2.04         2.14 
TCGA-06-1086 TCGA-06-1800 TCGA-06-2559 TCGA-06-5859 TCGA-06-6694 TCGA-08-0245 
        6.35        26.79         4.90         4.54         7.36        34.75 
TCGA-08-0359 TCGA-08-0386 TCGA-08-0525 TCGA-12-0776 TCGA-12-0826 TCGA-12-1088 
        0.95        15.72        15.98         9.11        27.78       127.56 
TCGA-12-1096 TCGA-14-0812 TCGA-14-0817 TCGA-16-0846 TCGA-19-0962 TCGA-19-1390 
        9.11         3.25         5.39         3.91         0.43        25.38 
TCGA-19-2619 TCGA-19-4065 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-5133 
        9.67         7.04         5.42        10.03        13.87        14.86 
TCGA-27-1834 TCGA-27-1838 TCGA-28-1750 TCGA-28-2514 TCGA-28-5207 TCGA-28-5213 
       33.14        11.51         8.32         5.26         9.04         9.80 
TCGA-28-5216 TCGA-32-1973 TCGA-32-1976 TCGA-32-1987 TCGA-32-2491 TCGA-32-2634 
       13.64        21.07         0.49        14.83        12.23        22.78 
TCGA-32-4210 TCGA-41-3392 TCGA-76-4925 TCGA-76-6285 TCGA-76-6286 TCGA-81-5911 
        3.68         0.99         4.77         8.32        20.94        17.69 

$`18Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 
        9.14         4.73        23.18        10.59        35.41        82.55 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.61        55.86        77.62        20.12        53.06        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.06        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
        5.49        10.19        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0107 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       17.65        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       15.95        12.23         9.86        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 
       16.70         9.80         7.82        19.46        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
        8.65         3.19         5.46         9.44        11.80         2.56 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.84        10.65         5.29        19.04         3.12        13.02 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        90.97         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        73.84        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 TCGA-06-0219 
        5.46         3.88         4.96        11.84        12.43         0.33 
TCGA-06-0221 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       18.02        11.80        20.42        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        0.26        70.52         4.67         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
       12.33         3.22         4.47        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
       19.53         5.36         2.70         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        7.43         3.58         8.65         7.86        13.58        33.90 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        1.08         0.76         9.27         2.83        30.64         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43        31.50        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 
        6.71         2.73         3.75         6.12         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        5.36         1.45         0.49         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 
        1.55         4.77         4.96        22.68         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 
       35.64        19.50         9.17        10.85         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.30         0.56         3.48        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 
       58.19         1.28        10.72         4.80         6.51        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        5.52        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
       43.10         5.49        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       18.48        10.62        23.51        38.76         8.91        20.58 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
       15.85        14.53         3.98         3.39         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       13.61         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.01        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 
        2.24        11.24        13.74         1.35         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.94        17.75        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.13        17.49         7.96         3.75         3.39 
TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0848 
        9.86        50.53        19.10        53.19         5.49         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.31         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
       21.86         8.61        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
        5.95        12.95         4.64         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        3.25         0.13         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08        16.47         7.00         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
        5.29         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 
        4.80        16.57         9.86        18.25        21.30        30.05 
TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       14.04        24.72        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 
        0.66         6.74         4.77         7.30         3.91        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 
       14.53        11.77        14.20         7.79         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       10.49         5.42        15.35         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 
        1.18         4.67        12.69        16.93        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       15.95         7.33         8.84        21.17        21.14        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.82        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        9.53         4.44        11.84         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.88         4.31        14.33         8.22         7.46 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6656 
       16.67         3.29         2.70        11.38        17.06         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-87-5896 
        0.07 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.20               0.07 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            127.56             108.82 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             9.915              9.930 
[1] "0.2 - 127.6 (9.9)" "0.1 - 108.8 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
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  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
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  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-87-5896 
"18Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D73V2, continuous
D73V3, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED    23  37
  18Q LOSS WILD-TYPE 195 298
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     23   37
  18Q LOSS WILD-TYPE  195  298
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               23                195
  MALE                 37                298
D73V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  18Q LOSS MUTATED                               1                   1
  18Q LOSS WILD-TYPE                             9                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  18Q LOSS MUTATED                                58
  18Q LOSS WILD-TYPE                             467
D73V5, multiclass
                                 clus
vv                                18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            1                 17
  UNTREATED PRIMARY (DE NOVO) GBM               58                467
D73V6, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED    38  22
  18Q LOSS WILD-TYPE 344 149
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     38   22
  18Q LOSS WILD-TYPE  344  149
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                38                344
  YES               22                149

Clustering(74) Variable = 19P LOSS MUTATION ANALYSIS
D74V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED     7  21
  19P LOSS WILD-TYPE 101 424
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                28                525 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                21                424 
$`19P LOSS MUTATED`
TCGA-02-0026 TCGA-02-0055 TCGA-02-0456 TCGA-06-0875 TCGA-06-2569 TCGA-06-5411 
       24.59         2.50         3.35        43.46         0.43         8.35 
TCGA-06-6389 TCGA-08-0344 TCGA-08-0349 TCGA-08-0358 TCGA-12-0619 TCGA-12-1095 
        7.76       108.82         7.59        19.50        10.39        15.85 
TCGA-12-3646 TCGA-14-0740 TCGA-14-0865 TCGA-14-1458 TCGA-14-3477 TCGA-15-1444 
       43.20        11.97        16.50         6.12         3.75        50.53 
TCGA-16-0850 TCGA-26-5136 TCGA-27-1834 TCGA-27-2519 TCGA-28-5207 TCGA-32-1976 
       16.31         1.22        33.14        10.39         9.04         0.49 
TCGA-32-4210 TCGA-76-4929 TCGA-76-4931 TCGA-87-5896 
        3.68         3.65         9.14         0.07 

$`19P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       53.06        42.74        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 
        3.19        15.06        12.59         6.54        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       26.99        65.00        11.67        17.65        23.15        92.61 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 
       10.55        47.11        11.34         9.24        16.18        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        90.97         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        73.84        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       28.47        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.20        12.43        22.49         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       10.32        11.80        20.42        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        0.26        70.52         4.67         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92        46.19         5.65         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
        5.42        20.94         7.43         6.35         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58        33.90         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83        30.64         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 
        5.98         4.37        31.50        11.21         3.52         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        6.12         4.54         3.91         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68        34.75         3.91         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       13.78        10.39         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0359 TCGA-08-0375 
       15.06        22.52        14.70        35.64         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        3.48        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
       14.01        14.40         1.61         5.95         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       11.38         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 
       25.28        13.61         6.38        59.41        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
        2.01        15.09         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 
        7.10         1.15        30.15         0.92        40.93        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.94        17.75        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
        7.13        17.49         7.96         3.39         9.86        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 
       53.19         5.49         3.91         9.93        26.07         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
       13.97         6.41        11.77        21.86         8.61         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       14.27         3.39        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        4.64        25.38         3.48         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        16.47         7.00         7.04         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.64         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        5.39         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        8.84         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
        9.86        18.25        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       24.72        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 
        6.74         4.77         7.30         5.26         3.91        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
        7.33         8.84        22.78        21.17        21.14        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.82        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        20.88         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4934 TCGA-76-4935 
        7.46         4.77         4.54         3.09         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        7.76         1.61        17.69 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.07               0.10 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            108.82             127.56 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              9.09              10.03 
[1] "0.1 - 108.8 (9.1)"  "0.1 - 127.6 (10.0)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-87-5896 
  "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-87-5896 
  "19P LOSS MUTATED" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-87-5896 
  "19P LOSS MUTATED" 
[1] "hr=" "1.2"
D74V2, continuous
D74V3, binary
                    cls
clus                   0   1
  19P LOSS MUTATED    13  15
  19P LOSS WILD-TYPE 205 320
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     13   15
  19P LOSS WILD-TYPE  205  320
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE               13                205
  MALE                 15                320
D74V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  19P LOSS MUTATED                               1                   0
  19P LOSS WILD-TYPE                             9                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  19P LOSS MUTATED                                27
  19P LOSS WILD-TYPE                             498
D74V5, multiclass
                                 clus
vv                                19P LOSS MUTATED 19P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            0                 18
  UNTREATED PRIMARY (DE NOVO) GBM               27                498
D74V6, binary
                    cls
clus                   0   1
  19P LOSS MUTATED    19   9
  19P LOSS WILD-TYPE 363 162
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     19    9
  19P LOSS WILD-TYPE  363  162
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                19                363
  YES                9                162

Clustering(75) Variable = 19Q LOSS MUTATION ANALYSIS
D75V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED     5  31
  19Q LOSS WILD-TYPE 103 414
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                36                517 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                31                414 
$`19Q LOSS MUTATED`
TCGA-02-0026 TCGA-02-0028 TCGA-02-0055 TCGA-02-0060 TCGA-02-0258 TCGA-02-0432 
       24.59        90.58         2.50         6.02        16.54        47.11 
TCGA-02-0456 TCGA-02-2466 TCGA-06-0875 TCGA-06-2561 TCGA-06-2569 TCGA-06-5411 
        3.35        16.80        43.46         9.27         0.43         8.35 
TCGA-08-0344 TCGA-08-0349 TCGA-08-0358 TCGA-12-0619 TCGA-12-0826 TCGA-12-1095 
      108.82         7.59        19.50        10.39        27.78        15.85 
TCGA-12-1598 TCGA-12-3646 TCGA-14-0740 TCGA-14-0862 TCGA-14-0865 TCGA-14-1458 
        9.44        43.20        11.97         2.89        16.50         6.12 
TCGA-15-1444 TCGA-16-0850 TCGA-26-5136 TCGA-27-1834 TCGA-27-2519 TCGA-28-5207 
       50.53        16.31         1.22        33.14        10.39         9.04 
TCGA-32-1976 TCGA-32-2491 TCGA-32-4210 TCGA-76-4929 TCGA-76-4931 TCGA-87-5896 
        0.49        12.23         3.68         3.65         9.14         0.07 

$`19Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       53.06        42.74        10.36         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.06        12.59         6.54        19.86         8.35         9.57 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       11.67        17.65        23.15        92.61        99.95        15.65 
TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       48.95        16.90        17.69        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         0.16        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 
       10.59        12.39        14.50        10.55        11.34         9.24 
TCGA-02-0451 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.18        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        90.97 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
       18.02        10.32        11.80        20.42        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        2.14         0.92        46.19         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
        5.85         5.42        20.94         7.43         6.35         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58        33.90         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        0.76         4.90         2.83        30.64         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 
        5.98         4.37        31.50        11.21         3.52         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 
        4.77         4.96        22.68        34.75         3.91         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
        4.34        13.78        10.39         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0359 
        6.41        15.06        22.52        14.70        35.64         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.56         3.48        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0654 
        5.52        14.01        14.40         1.61         5.95         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       18.48        10.62        23.51        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 
       11.38         9.11        14.53         3.98         3.39        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       13.61         6.38        59.41        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       15.09         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 
       13.74         3.25         1.35         5.39        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.90        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
       30.15         0.92        40.93        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 
        7.96         3.75         3.39         9.86        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 
        5.49         3.91         9.93        26.07         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.48         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       18.25        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 
        4.77         7.30         5.26         3.91        15.55        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 
        8.52        10.49         5.42        15.35        21.07         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.83 
TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       16.93        20.78        14.99        15.95         7.33         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       22.78        21.17        21.14        12.59        19.82        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.62         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       20.88         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        4.54         3.09         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 
       17.69 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.07               0.10 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
            108.82             127.56 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             10.39               9.90 
[1] "0.1 - 108.8 (10.4)" "0.1 - 127.6 (9.9)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-87-5896 
  "19Q LOSS MUTATED" 
[1] "hr=" "1.2"
D75V2, continuous
D75V3, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED    16  20
  19Q LOSS WILD-TYPE 202 315
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     16   20
  19Q LOSS WILD-TYPE  202  315
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE               16                202
  MALE                 20                315
D75V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  19Q LOSS MUTATED                               1                   2
  19Q LOSS WILD-TYPE                             9                  16
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  19Q LOSS MUTATED                                33
  19Q LOSS WILD-TYPE                             492
D75V5, multiclass
                                 clus
vv                                19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  1                  9
  TREATED PRIMARY GBM                            2                 16
  UNTREATED PRIMARY (DE NOVO) GBM               33                492
D75V6, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED    24  12
  19Q LOSS WILD-TYPE 358 159
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     24   12
  19Q LOSS WILD-TYPE  358  159
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                24                358
  YES               12                159

Clustering(76) Variable = 20P LOSS MUTATION ANALYSIS
D76V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED     3  15
  20P LOSS WILD-TYPE 105 430
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                18                535 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                15                430 
$`20P LOSS MUTATED`
TCGA-02-0001 TCGA-02-0011 TCGA-02-0051 TCGA-02-0060 TCGA-02-0281 TCGA-06-0188 
        9.14        20.71        15.06         6.02         3.98        28.47 
TCGA-06-0414 TCGA-06-0686 TCGA-08-0245 TCGA-12-1099 TCGA-14-0867 TCGA-14-3477 
       35.01         9.37        34.75         3.39         2.04         3.75 
TCGA-19-1390 TCGA-19-2629 TCGA-27-2521 TCGA-28-1750 TCGA-76-4934 TCGA-76-6286 
       25.38        16.47        10.39         8.32         2.53        20.94 

$`20P LOSS WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 
        4.73        18.35        23.18        10.59        35.41        82.55 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.61        55.86        77.62        20.12        53.06        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       12.59         6.54         2.50        19.86         8.35         9.57 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       11.67        17.65        23.15        92.61        99.95        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.90        17.69        10.75        14.47 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         0.16        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.24        16.18         3.35        16.80        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        0.10         3.55        22.72        32.48        10.52        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.07        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        7.82        19.46        46.59        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        90.97         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 
        2.53        40.37        73.84        26.33        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       18.28         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       22.49         0.33        18.02        10.32        11.80        20.42 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       14.96        10.29         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        8.05         0.16        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        2.04        23.57        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92        43.46        46.19         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58        33.90 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68         3.91       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.56         3.48        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        5.52        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.98         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.90        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
       17.49         7.96         3.39         9.86        50.53        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       53.19         5.49         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
       12.95         4.64         3.48         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.72        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 
       14.40        15.75         0.20         2.53         9.17         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55        14.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       14.99        15.95         7.33         8.84        22.78        21.17 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       21.14         3.68        12.59        19.82        10.85        10.62 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        11.54         7.73         3.45        20.88 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.31        14.33         8.22         7.46         4.77         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.09         3.65         9.14        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 
        2.70        11.38        17.06         8.32         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              2.04               0.07 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             35.01             127.56 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              9.88               9.93 
[1] "2.0 - 35.0 (9.9)"  "0.1 - 127.6 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-87-5896 
"20P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D76V2, continuous
D76V3, binary
                    cls
clus                   0   1
  20P LOSS MUTATED    10   8
  20P LOSS WILD-TYPE 208 327
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED     10    8
  20P LOSS WILD-TYPE  208  327
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE               10                208
  MALE                  8                327
D76V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  20P LOSS MUTATED                               0                   0
  20P LOSS WILD-TYPE                            10                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  20P LOSS MUTATED                                18
  20P LOSS WILD-TYPE                             507
D76V5, multiclass
                                 clus
vv                                20P LOSS MUTATED 20P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            0                 18
  UNTREATED PRIMARY (DE NOVO) GBM               18                507
D76V6, binary
                    cls
clus                   0   1
  20P LOSS MUTATED    12   6
  20P LOSS WILD-TYPE 370 165
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED     12    6
  20P LOSS WILD-TYPE  370  165
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                12                370
  YES                6                165

Clustering(77) Variable = 20Q LOSS MUTATION ANALYSIS
D77V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED     2  15
  20Q LOSS WILD-TYPE 106 430
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                17                536 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                15                430 
$`20Q LOSS MUTATED`
TCGA-02-0001 TCGA-02-0051 TCGA-02-0060 TCGA-02-0281 TCGA-06-0188 TCGA-06-0414 
        9.14        15.06         6.02         3.98        28.47        35.01 
TCGA-06-0686 TCGA-08-0245 TCGA-12-1099 TCGA-14-0867 TCGA-14-3477 TCGA-19-1390 
        9.37        34.75         3.39         2.04         3.75        25.38 
TCGA-19-2629 TCGA-28-1750 TCGA-32-2494 TCGA-76-6285 TCGA-76-6286 
       16.47         8.32        20.78         8.32        20.94 

$`20Q LOSS WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
        3.19        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        9.57        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.29         8.81        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.15        92.61        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
       14.47        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.69        10.62         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.80         7.82        19.46        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
        8.65         3.19         5.46         9.44        11.80         2.56 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.84        10.65         5.29        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        0.23         2.20         2.73        90.97         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 
       19.00         2.53        40.37        73.84        26.33        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       12.43        22.49         0.33        18.02        10.32        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        4.67         8.05         0.16        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        9.63         2.04        23.57        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.14         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.35         3.58        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       33.90         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
       30.64         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.30         0.56         3.48        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
        5.95         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.10        43.10         5.49         9.11        14.83        14.27 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       91.73        24.76        18.48        10.62        23.51        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.91        20.58       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       30.54        21.63        11.97        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
       14.53         3.98         9.44        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.52        11.74        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.74         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       26.33        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.94        17.75        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 
        7.13        17.49         7.96         3.39         9.86        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
        5.95        12.95         4.64         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        0.16         4.08         7.00         7.04         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.64         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        5.39         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.57         9.86        18.25        33.14        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        9.17         7.59         8.45         1.18         1.51         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        0.13         0.66         6.74         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55        14.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       14.20         7.79        13.64         4.21         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.35        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.83        16.93 
TCGA-32-2491 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       12.23        14.99        15.95         7.33         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
       21.17        21.14         3.68        12.59        19.82        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.62         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44        11.84         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       20.88         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6656 
       16.67         3.29         2.70        11.38        17.06         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              2.04               0.07 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             35.01             127.56 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              9.37               9.98 
[1] "2.0 - 35.0 (9.4)"   "0.1 - 127.6 (10.0)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
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        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-87-5896 
"20Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D77V2, continuous
D77V3, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED    10   7
  20Q LOSS WILD-TYPE 208 328
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED     10    7
  20Q LOSS WILD-TYPE  208  328
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE               10                208
  MALE                  7                328
D77V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  20Q LOSS MUTATED                               0                   0
  20Q LOSS WILD-TYPE                            10                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  20Q LOSS MUTATED                                17
  20Q LOSS WILD-TYPE                             508
D77V5, multiclass
                                 clus
vv                                20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            0                 18
  UNTREATED PRIMARY (DE NOVO) GBM               17                508
D77V6, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED    11   6
  20Q LOSS WILD-TYPE 371 165
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED     11    6
  20Q LOSS WILD-TYPE  371  165
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                11                371
  YES                6                165

Clustering(78) Variable = 21Q LOSS MUTATION ANALYSIS
D78V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED     6  34
  21Q LOSS WILD-TYPE 102 411
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                40                513 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                34                411 
$`21Q LOSS MUTATED`
TCGA-02-0011 TCGA-02-0015 TCGA-02-0051 TCGA-02-0106 TCGA-02-0114 TCGA-02-0266 
       20.71        20.61        15.06        11.67        99.95        17.69 
TCGA-02-0281 TCGA-02-0339 TCGA-06-0209 TCGA-06-0402 TCGA-06-0414 TCGA-06-0648 
        3.98        12.39         3.88         0.26        35.01         9.63 
TCGA-06-0875 TCGA-06-2557 TCGA-06-6389 TCGA-06-6693 TCGA-06-6694 TCGA-08-0516 
       43.46         1.08         7.76         0.49         7.36        18.44 
TCGA-12-0826 TCGA-12-0827 TCGA-12-1099 TCGA-12-1600 TCGA-12-3653 TCGA-12-5295 
       27.78        38.76         3.39        13.61        11.74        13.08 
TCGA-14-0740 TCGA-14-0817 TCGA-14-1823 TCGA-14-3477 TCGA-15-0742 TCGA-16-0848 
       11.97         5.39        17.82         3.75         9.86         9.93 
TCGA-16-0850 TCGA-19-0960 TCGA-19-2629 TCGA-27-2521 TCGA-28-2514 TCGA-32-1978 
       16.31         8.61        16.47        10.39         5.26        15.85 
TCGA-32-4210 TCGA-41-3392 TCGA-76-4925 TCGA-76-4934 
        3.68         0.99         4.77         2.53 

$`21Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0014 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       82.55        55.86        77.62        20.12        53.06        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       12.59         6.54         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.29         8.81        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 
       65.00        17.65        23.15        92.61        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 
       16.54        16.90        10.75        14.47        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0422 
       15.91        25.71         4.37        25.12        10.59        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        90.97 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        73.84 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        7.04         2.60         0.39         6.44         5.46         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.20        12.43        22.49         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       10.32        11.80        20.42        14.96        10.29         5.52 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 
       70.52         4.67         8.05         0.16        12.33         3.22 
TCGA-06-0646 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        4.47         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 
        5.36         2.70         2.14         0.92        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.35         3.58        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       33.90         0.76         4.90         9.27         2.83        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43        31.50 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        3.91         5.36         1.45         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        1.55         4.77         4.96        22.68        34.75         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       11.77         8.52        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        6.51        15.98        17.29         5.52        14.01        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
        1.61        10.39         5.95         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       23.51         8.91        20.58       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       30.54        21.63        11.97        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 
       14.53         3.98         9.44        25.28         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        3.22         2.01        15.09         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 
        2.24        11.24        13.74         3.25         1.35         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 
        6.12        12.43         0.99         1.94        17.75         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-1444 
        5.88         7.13        17.49         7.96         3.39        50.53 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0861 
       19.10        53.19         5.49         3.91        26.07         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 
       13.97         6.41        11.77        21.86         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.48         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       18.25        33.14        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       24.72        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        6.74         4.77         7.30         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.49         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
        7.33         8.84        22.78        21.17        21.14        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.82        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        9.53         4.44        11.84         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        20.88         4.31        14.33         8.22         7.46 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         3.65         9.14        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.32        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.26               0.07 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             99.95             127.56 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             11.03               9.86 
[1] "0.3 - 100.0 (11.0)" "0.1 - 127.6 (9.9)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-87-5896 
"21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
D78V3, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED    18  22
  21Q LOSS WILD-TYPE 200 313
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     18   22
  21Q LOSS WILD-TYPE  200  313
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE               18                200
  MALE                 22                313
D78V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  21Q LOSS MUTATED                               0                   1
  21Q LOSS WILD-TYPE                            10                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  21Q LOSS MUTATED                                39
  21Q LOSS WILD-TYPE                             486
D78V5, multiclass
                                 clus
vv                                21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  0                 10
  TREATED PRIMARY GBM                            1                 17
  UNTREATED PRIMARY (DE NOVO) GBM               39                486
D78V6, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED    24  16
  21Q LOSS WILD-TYPE 358 155
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     24   16
  21Q LOSS WILD-TYPE  358  155
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                24                358
  YES               16                155

Clustering(79) Variable = 22Q LOSS MUTATION ANALYSIS
D79V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED    31 144
  22Q LOSS WILD-TYPE  77 301
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               175                378 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               144                301 
$`22Q LOSS MUTATED`
TCGA-02-0007 TCGA-02-0010 TCGA-02-0015 TCGA-02-0016 TCGA-02-0027 TCGA-02-0039 
       23.18        35.41        20.61        55.86        10.36        10.52 
TCGA-02-0043 TCGA-02-0054 TCGA-02-0057 TCGA-02-0059 TCGA-02-0060 TCGA-02-0075 
       18.28         6.54        19.86         9.57         6.02        20.84 
TCGA-02-0086 TCGA-02-0099 TCGA-02-0113 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
        8.81         3.48        92.61        16.90        17.69        10.75 
TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0333 TCGA-02-0456 TCGA-02-2466 
        9.86        10.62         0.16         4.37         3.35        16.80 
TCGA-02-2483 TCGA-02-2486 TCGA-06-0129 TCGA-06-0140 TCGA-06-0141 TCGA-06-0147 
       15.29        16.18        32.48         0.20         9.21        16.70 
TCGA-06-0152 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 
       11.80         5.46         9.44         2.56        56.84         5.29 
TCGA-06-0168 TCGA-06-0175 TCGA-06-0182 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 
       19.04         2.73         2.53        73.84        28.47        14.93 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       18.28         4.67         2.60        22.49         0.33        18.02 
TCGA-06-0237 TCGA-06-0241 TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0744 
       10.32        14.96         5.52         0.26         4.67        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0875 TCGA-06-0878 TCGA-06-0882 TCGA-06-0939 
        5.36         2.70        43.46         7.17         5.42        20.94 
TCGA-06-1084 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2562 TCGA-06-2567 
        7.43        13.58         1.08         0.76         2.83         4.37 
TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 TCGA-06-5418 TCGA-06-5856 TCGA-06-6389 
       11.21         8.35         8.81         2.73         3.75         7.76 
TCGA-06-6390 TCGA-06-6693 TCGA-06-6697 TCGA-06-6698 TCGA-08-0244 TCGA-08-0245 
        5.36         0.49        12.85         4.77        22.68        34.75 
TCGA-08-0246 TCGA-08-0349 TCGA-08-0350 TCGA-08-0354 TCGA-08-0386 TCGA-08-0389 
        3.91         7.59         3.39        15.06        15.72         3.19 
TCGA-08-0392 TCGA-08-0512 TCGA-08-0516 TCGA-08-0520 TCGA-12-0619 TCGA-12-0620 
        0.30        11.77        18.44        10.72        10.39         5.95 
TCGA-12-0656 TCGA-12-0662 TCGA-12-0670 TCGA-12-0776 TCGA-12-0821 TCGA-12-0826 
       65.88        38.17        25.97         9.11        10.62        27.78 
TCGA-12-1088 TCGA-12-1091 TCGA-12-1096 TCGA-12-1097 TCGA-12-1598 TCGA-12-1600 
      127.56        30.54         9.11        14.53         9.44        13.61 
TCGA-12-3646 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-14-0736 TCGA-14-0783 
       43.20        11.77        11.74        13.08        15.09         6.18 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0867 TCGA-14-1034 TCGA-14-1402 TCGA-14-1450 
        2.89        16.50         2.04        15.95        32.02        58.78 
TCGA-14-1454 TCGA-14-1794 TCGA-14-1821 TCGA-14-3477 TCGA-15-0742 TCGA-15-1447 
       30.15         0.99        17.75         3.75         9.86        53.19 
TCGA-16-1056 TCGA-19-0962 TCGA-19-0964 TCGA-19-1385 TCGA-19-1389 TCGA-19-1392 
       13.35         0.43         3.39        10.75         4.64         3.48 
TCGA-19-1791 TCGA-19-2620 TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        0.13         4.87         7.53         4.08        16.47         7.00 
TCGA-19-5947 TCGA-19-5956 TCGA-19-5958 TCGA-19-5960 TCGA-26-5132 TCGA-26-5136 
        6.64         6.51         5.39         5.42         9.40         1.22 
TCGA-26-6173 TCGA-27-1830 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-2519 
        7.92         4.80         9.86        33.14        21.30        10.39 
TCGA-27-2523 TCGA-27-2527 TCGA-28-1752 TCGA-28-2506 TCGA-28-2509 TCGA-28-5207 
       16.08        14.40         8.45         6.74         4.77         9.04 
TCGA-28-5208 TCGA-28-5213 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1978 
       15.55         9.80        15.35        21.07         0.49        15.85 
TCGA-32-1980 TCGA-32-1986 TCGA-32-2491 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
        1.18        12.69        12.23        15.95         8.84        22.78 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-74-6581 
        8.94         9.53        11.84         0.20         7.73         8.22 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4929 TCGA-76-4934 TCGA-76-6280 TCGA-76-6657 
        4.77         4.54         3.65         2.53        11.38         5.03 
TCGA-87-5896 
        0.07 

$`22Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0011 TCGA-02-0014 
        9.14         4.73        18.35        10.59        20.71        82.55 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0028 
       77.62        20.12        53.06        42.74        24.59        90.58 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0046 TCGA-02-0047 
        2.83        14.14         3.58        10.72         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 TCGA-02-0058 TCGA-02-0064 
        3.19        15.06        12.59         2.50         8.35        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0079 
       26.43        28.70        25.05         5.49        10.19        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 
       89.72        22.72         0.23        51.29        57.76        16.93 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 
       26.99        65.00        11.67        17.65        23.15        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       15.65        48.95        16.54        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0324 TCGA-02-0330 TCGA-02-0332 
       14.20        15.95        12.23         7.69        15.91        25.71 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 TCGA-02-2485 TCGA-06-0119 
       11.34         9.24        16.18        12.92        15.42         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0148 TCGA-06-0149 
        2.20        11.74         2.33        20.09         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0160 
       19.46        46.59        12.79         8.65         3.19        11.80 
TCGA-06-0165 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 
       10.65         3.12        13.02         0.23         2.20        90.97 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0187 TCGA-06-0190 
        1.97        53.98        19.00        40.37        26.33        10.29 
TCGA-06-0195 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        7.04         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0238 TCGA-06-0240 TCGA-06-0394 
       11.84         0.20        12.43        11.80        20.42        10.29 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
       70.52         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0879 TCGA-06-0881 
        2.14         0.92        46.19         5.65        22.98         5.85 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1805 
        6.35         3.58        26.79         8.65         7.86        33.90 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        4.90         9.27        30.64         5.95         6.81         5.98 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 
        0.43        31.50         3.52         4.54         8.98         8.55 
TCGA-06-5416 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6391 TCGA-06-6694 
        6.71         6.12         4.54         3.91         1.45         7.36 
TCGA-06-6695 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0344 TCGA-08-0345 
        8.28         1.55         4.77         4.96       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
        4.34        13.78        10.39        53.79         1.28         6.41 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0517 
       10.85        10.59         0.56         3.48         8.52        58.19 
TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
        1.28         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0654 TCGA-12-0657 TCGA-12-0688 
       14.01        14.40         1.61         7.17         0.10        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
       43.10         5.49        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 
       18.48        23.51        38.76         8.91        20.58         5.82 
TCGA-12-1090 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1098 
        6.21        21.63        11.97        11.38        15.85         3.98 
TCGA-12-1099 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 
        3.39        25.28         6.38        59.41        25.78        11.54 
TCGA-12-3650 TCGA-12-3652 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       10.95        34.52         3.22         2.01        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0866 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        5.39        26.33        28.90        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 
        1.12         3.75        23.11         7.10         1.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 
       40.93         6.12        12.43         1.94        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-1444 
        5.88         7.13        17.49         7.96         3.39        50.53 
TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       19.10         5.49         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1060 TCGA-16-1062 
        4.27        29.00         0.82         9.90         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 
       13.97         6.41        11.77        21.86         8.61        14.27 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 
        9.07         5.95        12.95        25.38         7.13        12.66 
TCGA-19-1789 TCGA-19-2619 TCGA-19-2621 TCGA-19-2624 TCGA-19-4065 TCGA-19-5950 
        3.25         9.67         1.08         0.16         7.04        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5959 
        8.02        18.64         4.73         7.96         1.78         5.29 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 TCGA-26-6174 TCGA-27-1831 
       14.86         5.49         8.84         1.58         2.30        16.57 
TCGA-27-1833 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2521 
       18.25        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        7.59         2.86        15.75         0.20         2.53         9.17 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        8.32         7.59         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5209 TCGA-28-5211 
        0.66         7.30         5.26         3.91        14.53        11.77 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       14.20         7.79        13.64         4.21         8.52        10.49 
TCGA-28-6450 TCGA-32-1977 TCGA-32-1979 TCGA-32-1982 TCGA-32-1987 TCGA-32-1991 
        5.42         0.10        19.50         4.67        14.83        16.93 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
       20.78        14.99         7.33        21.17        21.14         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        19.82        10.85        10.62         0.85        13.35 
TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.99         4.44        11.54         3.45        20.88         4.31 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4928 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 
       14.33         7.46         3.09         9.14        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        3.29         2.70        17.06         8.32        20.94         4.83 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.07               0.10 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            127.56             108.82 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              9.57              10.34 
[1] "0.1 - 127.6 (9.6)"  "0.1 - 108.8 (10.3)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0240 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0241         TCGA-06-0394         TCGA-06-0397 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-06-0402         TCGA-06-0409         TCGA-06-0410 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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        TCGA-06-0412         TCGA-06-0413         TCGA-06-0414 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0644         TCGA-06-0645         TCGA-06-0646 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0648         TCGA-06-0649         TCGA-06-0650 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-0686         TCGA-06-0743         TCGA-06-0744 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-06-0745         TCGA-06-0747         TCGA-06-0749 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-0877         TCGA-06-0878         TCGA-06-0879 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-0881         TCGA-06-0882         TCGA-06-0939 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-06-1084         TCGA-06-1086         TCGA-06-1087 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-1800         TCGA-06-1801         TCGA-06-1802 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-1804         TCGA-06-1805         TCGA-06-2557 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-06-2558         TCGA-06-2559         TCGA-06-2561 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-2562         TCGA-06-2563         TCGA-06-2564 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-2565         TCGA-06-2566         TCGA-06-2567 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-06-2569         TCGA-06-2570         TCGA-06-5408 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-06-5410         TCGA-06-5411         TCGA-06-5412 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-5413         TCGA-06-5414         TCGA-06-5415 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-5416         TCGA-06-5418         TCGA-06-5856 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6391 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-6693         TCGA-06-6694         TCGA-06-6695 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6698         TCGA-06-6699 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-06-6700         TCGA-06-6701         TCGA-08-0244 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0349         TCGA-08-0350 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-08-0351         TCGA-08-0352         TCGA-08-0353 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-08-0354         TCGA-08-0355         TCGA-08-0356 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-08-0357         TCGA-08-0358         TCGA-08-0359 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0392 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-08-0509         TCGA-08-0510         TCGA-08-0512 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-08-0514         TCGA-08-0516         TCGA-08-0517 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-08-0518         TCGA-08-0520         TCGA-08-0521 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1444         TCGA-15-1446 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-16-0846 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-16-0848         TCGA-16-0849         TCGA-16-0850 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-16-0861         TCGA-16-1045         TCGA-16-1047 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-16-1055         TCGA-16-1056         TCGA-16-1060 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-16-1062         TCGA-16-1063         TCGA-16-1460 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-19-0955         TCGA-19-0957         TCGA-19-0960 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0963         TCGA-19-0964 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-19-1385         TCGA-19-1386         TCGA-19-1387 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-19-1388         TCGA-19-1389         TCGA-19-1390 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-19-1392         TCGA-19-1786         TCGA-19-1787 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-19-1789         TCGA-19-1791         TCGA-19-2619 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-19-2620         TCGA-19-2621         TCGA-19-2623 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-19-2624         TCGA-19-2625         TCGA-19-2629 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-19-2631         TCGA-19-4065         TCGA-19-5947 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-19-5950         TCGA-19-5951         TCGA-19-5952 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-19-5953         TCGA-19-5954         TCGA-19-5955 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1439 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-26-1440         TCGA-26-1442         TCGA-26-1443 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-26-1799         TCGA-26-5132         TCGA-26-5133 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-26-5134         TCGA-26-5135         TCGA-26-5136 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-28-1747         TCGA-28-1749         TCGA-28-1750 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-28-1751         TCGA-28-1752         TCGA-28-1753 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-28-1755         TCGA-28-1756         TCGA-28-1757 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-28-2502         TCGA-28-2506         TCGA-28-2509 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-28-2513         TCGA-28-2514         TCGA-28-5204 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-28-5207         TCGA-28-5208         TCGA-28-5209 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5218 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-28-5219         TCGA-28-5220         TCGA-28-6450 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-32-1970         TCGA-32-1973         TCGA-32-1976 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-32-1977         TCGA-32-1978         TCGA-32-1979 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-32-1980         TCGA-32-1982         TCGA-32-1986 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-32-1987         TCGA-32-1991         TCGA-32-2491 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-32-2494         TCGA-32-2495         TCGA-32-2615 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-32-2616         TCGA-32-2632         TCGA-32-2634 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-32-2638         TCGA-32-4208         TCGA-32-4210 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-32-4211         TCGA-32-4213         TCGA-32-4719 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-32-5222         TCGA-41-2571         TCGA-41-2572 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-41-3392 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-41-3393         TCGA-41-3915         TCGA-41-4097 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-41-5651         TCGA-41-6646         TCGA-74-6573 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910         TCGA-81-5911 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-87-5896 
  "22Q LOSS MUTATED" 
[1] "hr=" "1.1"
D79V2, continuous
D79V3, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED    68 107
  22Q LOSS WILD-TYPE 150 228
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     68  107
  22Q LOSS WILD-TYPE  150  228
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE               68                150
  MALE                107                228
D79V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  22Q LOSS MUTATED                               2                   6
  22Q LOSS WILD-TYPE                             8                  12
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  22Q LOSS MUTATED                               167
  22Q LOSS WILD-TYPE                             358
D79V5, multiclass
                                 clus
vv                                22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                  2                  8
  TREATED PRIMARY GBM                            6                 12
  UNTREATED PRIMARY (DE NOVO) GBM              167                358
D79V6, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED   121  54
  22Q LOSS WILD-TYPE 261 117
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED    121   54
  22Q LOSS WILD-TYPE  261  117
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO               121                261
  YES               54                117

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
D80V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED    28  85
  XQ LOSS WILD-TYPE  80 360
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              113               440 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               85               360 
$`XQ LOSS MUTATED`
TCGA-02-0007 TCGA-02-0011 TCGA-02-0024 TCGA-02-0026 TCGA-02-0039 TCGA-02-0048 
       23.18        20.71        53.06        24.59        10.52         3.19 
TCGA-02-0099 TCGA-02-0330 TCGA-02-0339 TCGA-02-2466 TCGA-06-0129 TCGA-06-0152 
        3.48        15.91        12.39        16.80        32.48        11.80 
TCGA-06-0162 TCGA-06-0166 TCGA-06-0171 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
        2.56         5.29        13.02        40.37        73.84        26.33 
TCGA-06-0188 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0414 
       28.47        12.43        22.49         0.33        18.02        35.01 
TCGA-06-0875 TCGA-06-0878 TCGA-06-1800 TCGA-06-2557 TCGA-06-2558 TCGA-06-2564 
       43.46         7.17        26.79         1.08         0.76         5.95 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        0.43        31.50        11.21         6.71         2.73         3.75 
TCGA-06-5859 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-08-0245 TCGA-08-0348 
        4.54         7.76         5.36         0.49        34.75        10.39 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0386 TCGA-08-0389 TCGA-08-0392 TCGA-08-0512 
       15.06        22.52        15.72         3.19         0.30        11.77 
TCGA-08-0517 TCGA-08-0520 TCGA-08-0525 TCGA-12-0615 TCGA-12-0821 TCGA-12-0827 
       58.19        10.72        15.98        14.01        10.62        38.76 
TCGA-12-1091 TCGA-12-3644 TCGA-12-3646 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       30.54        59.41        43.20        34.52        11.74        13.08 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0787 TCGA-14-0862 TCGA-14-0865 TCGA-14-0871 
       15.09        11.97         2.24         2.89        16.50        28.90 
TCGA-14-1453 TCGA-14-3477 TCGA-15-0742 TCGA-15-1447 TCGA-16-0861 TCGA-16-1045 
        1.15         3.75         9.86        53.19         4.27        29.00 
TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-2619 TCGA-19-2621 
       12.95        25.38         3.48         7.13         9.67         1.08 
TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 TCGA-19-5947 TCGA-19-5956 TCGA-19-5960 
        7.53         4.08        16.47         6.64         6.51         5.42 
TCGA-26-1439 TCGA-26-1440 TCGA-26-5133 TCGA-27-2524 TCGA-28-1750 TCGA-28-2514 
       13.87         9.73        14.86         7.59         8.32         5.26 
TCGA-28-5204 TCGA-28-5220 TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-2494 
        3.91        10.49        21.07         0.10        15.85        20.78 
TCGA-32-2615 TCGA-32-2634 TCGA-32-4208 TCGA-32-4213 TCGA-32-4719 TCGA-41-2572 
       15.95        22.78        21.14        19.82        10.85        13.35 
TCGA-41-2575 TCGA-41-3392 TCGA-74-6575 TCGA-76-4925 TCGA-76-4926 TCGA-76-4929 
        9.53         0.99        20.88         4.77         4.54         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6285 TCGA-76-6286 
        9.14         2.53        10.78         8.32        20.94 

$`XQ LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 
        9.14         4.73        18.35        10.59        35.41        82.55 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0027 
       20.61        55.86        77.62        20.12        42.74        10.36 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 
       90.58         2.83        14.14         3.58        10.72        18.28 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
        6.84        14.70        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
       16.93        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 
       25.71         4.37        25.12        10.59        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 
       47.11        11.34         9.24        16.18         3.35        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 
       47.31         0.10         3.55        22.72        10.52        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.07        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        7.82        19.46        46.59        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 
        5.46         9.44        11.80        56.84        10.65        19.04 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
        3.12         0.23         2.20         2.73        90.97         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       53.98        19.00         2.53        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0237 TCGA-06-0238 
        3.88         4.96        11.84         0.20        10.32        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       20.42        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        4.67         8.05         0.16        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 
        5.36         2.70         2.14         0.92        46.19         5.65 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2559 
        3.58         8.65         7.86        13.58        33.90         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        9.27         2.83        30.64         6.81         5.98         4.37 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5858 TCGA-06-6388 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        6.12         3.91         1.45         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 
        4.77         1.55         4.77         4.96        22.68         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0349 TCGA-08-0350 
      108.82         1.74         4.34        13.78         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
       53.79         1.28         6.41        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 
        0.95         9.17        10.85        10.59         0.56         3.48 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 
        8.52        18.44         1.28         4.80         6.51        17.29 
TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
        5.52        14.40         1.61        10.39         5.95         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       18.48        23.51        27.78         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        5.82         6.21        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
        9.11        14.53         3.98         3.39         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       13.61         6.38        25.78        11.54        10.95        11.77 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0789 
        3.22         2.01         0.95         6.18        23.05        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 
       13.74         3.25         1.35         5.39        26.33         2.04 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 
       32.02        58.78        23.11         7.10        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.93         6.12        12.43         0.99         1.94        17.75 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-4157 TCGA-15-1444 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
        3.39        50.53        19.10         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
       26.07        16.31         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1389 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 TCGA-19-2624 
        4.64        12.66         3.25         0.13         4.87         0.16 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         7.04        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-26-1438 TCGA-26-1442 
        7.96         1.78         5.39         5.29        10.03        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        7.10         9.37         9.40         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       18.25        33.14        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       24.72        10.39        10.39        16.08         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       15.75         0.20         2.53         9.17         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        4.77         7.30         9.04        15.55        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
        9.80        14.20         7.79        13.64         4.21         8.52 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        5.42        15.35         0.49        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2495 TCGA-32-2616 
       12.69        14.83        16.93        12.23        14.99         7.33 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 
        8.84        21.17         3.68        12.59        10.62         0.85 
TCGA-41-2573 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        8.94         4.44        11.84         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4928 
        3.45         4.31        14.33         8.22         7.46         3.09 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6656 
       16.67         3.29         2.70        11.38        17.06         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.10              0.07 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            73.84            127.56 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            11.74              9.44 
[1] "0.1 - 73.8 (11.7)" "0.1 - 127.6 (9.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-87-5896 
"XQ LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-87-5896 
"XQ LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0240        TCGA-06-0241        TCGA-06-0394 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0397        TCGA-06-0402        TCGA-06-0409        TCGA-06-0410 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0412        TCGA-06-0413        TCGA-06-0414        TCGA-06-0644 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-0645        TCGA-06-0646        TCGA-06-0648        TCGA-06-0649 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0650        TCGA-06-0686        TCGA-06-0743        TCGA-06-0744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0745        TCGA-06-0747        TCGA-06-0749        TCGA-06-0750 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0877        TCGA-06-0878 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1804        TCGA-06-1805 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2557        TCGA-06-2558        TCGA-06-2559        TCGA-06-2561 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2562        TCGA-06-2563        TCGA-06-2564        TCGA-06-2565 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-2566        TCGA-06-2567        TCGA-06-2569        TCGA-06-2570 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-06-5408        TCGA-06-5410        TCGA-06-5411        TCGA-06-5412 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-5413        TCGA-06-5414        TCGA-06-5415        TCGA-06-5416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-5418        TCGA-06-5856        TCGA-06-5858        TCGA-06-5859 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-06-6388        TCGA-06-6389        TCGA-06-6390        TCGA-06-6391 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-06-6693        TCGA-06-6694        TCGA-06-6695        TCGA-06-6697 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-6698        TCGA-06-6699        TCGA-06-6700        TCGA-06-6701 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-08-0349        TCGA-08-0350        TCGA-08-0351        TCGA-08-0352 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0353        TCGA-08-0354        TCGA-08-0355        TCGA-08-0356 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-08-0357        TCGA-08-0358        TCGA-08-0359        TCGA-08-0375 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-08-0392        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-08-0514        TCGA-08-0516        TCGA-08-0517        TCGA-08-0518 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-08-0520        TCGA-08-0521        TCGA-08-0524        TCGA-08-0525 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-08-0529        TCGA-08-0531        TCGA-12-0615        TCGA-12-0616 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-12-0618        TCGA-12-0619        TCGA-12-0620        TCGA-12-0654 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-15-1444        TCGA-15-1446        TCGA-15-1447        TCGA-15-1449 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-16-0846        TCGA-16-0848        TCGA-16-0849        TCGA-16-0850 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-0861        TCGA-16-1045        TCGA-16-1047        TCGA-16-1055 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-1056        TCGA-16-1060        TCGA-16-1062        TCGA-16-1063 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-1460        TCGA-19-0955        TCGA-19-0957        TCGA-19-0960 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0963        TCGA-19-0964        TCGA-19-1385 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-1386        TCGA-19-1387        TCGA-19-1388        TCGA-19-1389 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-1791        TCGA-19-2619        TCGA-19-2620 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-19-2621        TCGA-19-2623        TCGA-19-2624        TCGA-19-2625 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-19-2629        TCGA-19-2631        TCGA-19-4065        TCGA-19-5947 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-19-5950        TCGA-19-5951        TCGA-19-5952        TCGA-19-5953 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-5954        TCGA-19-5955        TCGA-19-5956        TCGA-19-5958 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1439 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-26-1440        TCGA-26-1442        TCGA-26-1443        TCGA-26-1799 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-26-5132        TCGA-26-5133        TCGA-26-5134        TCGA-26-5135 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-26-5136        TCGA-26-5139        TCGA-26-6173        TCGA-26-6174 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1830        TCGA-27-1831        TCGA-27-1832        TCGA-27-1833 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1834        TCGA-27-1835        TCGA-27-1836        TCGA-27-1837 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1838        TCGA-27-2518        TCGA-27-2519        TCGA-27-2521 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-2523        TCGA-27-2524        TCGA-27-2526        TCGA-27-2527 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-2528        TCGA-28-1746        TCGA-28-1747        TCGA-28-1749 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1753 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1755        TCGA-28-1756        TCGA-28-1757        TCGA-28-2502 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-2506        TCGA-28-2509        TCGA-28-2513        TCGA-28-2514 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-28-5204        TCGA-28-5207        TCGA-28-5208        TCGA-28-5209 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5211        TCGA-28-5213        TCGA-28-5214        TCGA-28-5215 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5216        TCGA-28-5218        TCGA-28-5219        TCGA-28-5220 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-28-6450        TCGA-32-1970        TCGA-32-1973        TCGA-32-1976 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-32-1977        TCGA-32-1978        TCGA-32-1979        TCGA-32-1980 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-1982        TCGA-32-1986        TCGA-32-1987        TCGA-32-1991 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-2491        TCGA-32-2494        TCGA-32-2495        TCGA-32-2615 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-32-2616        TCGA-32-2632        TCGA-32-2634        TCGA-32-2638 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-32-4208        TCGA-32-4210        TCGA-32-4211        TCGA-32-4213 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-32-4719        TCGA-32-5222        TCGA-41-2571        TCGA-41-2572 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-41-2573        TCGA-41-2575        TCGA-41-3392        TCGA-41-3393 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-41-3915        TCGA-41-4097        TCGA-41-5651        TCGA-41-6646 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910        TCGA-81-5911 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-87-5896 
"XQ LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D80V2, continuous
D80V3, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED    46  67
  XQ LOSS WILD-TYPE 172 268
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     46   67
  XQ LOSS WILD-TYPE  172  268
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE              46               172
  MALE                67               268
D80V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  XQ LOSS MUTATED                               0                   3
  XQ LOSS WILD-TYPE                            10                  15
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  XQ LOSS MUTATED                               110
  XQ LOSS WILD-TYPE                             415
D80V5, multiclass
                                 clus
vv                                XQ LOSS MUTATED XQ LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                 0                10
  TREATED PRIMARY GBM                           3                15
  UNTREATED PRIMARY (DE NOVO) GBM             110               415
D80V6, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED    82  31
  XQ LOSS WILD-TYPE 300 140
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     82   31
  XQ LOSS WILD-TYPE  300  140
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO               82               300
  YES              31               140
> q(save="no")
