WARNING: the dataset is not col-normalized (recommended with Pearson correlation)
min sampled: 11
max sampled: 20
avg sampled: 15.957447
16 17 16 19 14 16 14 16 16 16 19 15 16 13 18 17 14 17 16 15 17 18 16 16 19 17 13 16 13 16 17 14 15 16 19 18 19 15 17 14 19 15 16 14 18 15 14 19 13 18 17 18 18 14 18 15 15 19 12 18 15 19 18 15 17 12 13 17 14 14 16 13 17 15 17 17 14 14 14 13 16 15 19 13 15 17 15 16 20 17 15 16 18 16 15 15 15 18 18 16 17 14 13 17 16 14 13 12 18 16 16 18 16 17 18 17 16 19 20 18 14 16 15 16 15 17 17 12 15 18 15 16 16 13 16 16 15 16 16 17 17 15 17 17 14 17 18 14 16 13 15 17 18 15 16 18 14 16 12 13 17 16 17 13 17 17 18 17 13 16 18 11 17 17 15 19 17 19 16 15 16 18 19 12 14 18 15 16 Number of clusters distribution:
Num	Count
1	0
2	20
3	20
4	20
5	20
6	20
7	20
8	20
Reading consensus matrices from files ..

	processing file 'outputprefix.expclu.sub150.2.gct' ..

	processing file 'outputprefix.expclu.sub150.3.gct' ..

	processing file 'outputprefix.expclu.sub150.4.gct' ..

	processing file 'outputprefix.expclu.sub150.5.gct' ..

	processing file 'outputprefix.expclu.sub150.6.gct' ..

	processing file 'outputprefix.expclu.sub150.7.gct' ..

	processing file 'outputprefix.expclu.sub150.8.gct' ..

Plotting statistics to 'outputprefix.expclu.sub150.statistics.pdf' .. 

	Lorenz curve .. done.

	Gini..done.

	Consensus distribution .. done.

	CDF area .. done.

lsf stdout
Sender: LSF System <lsf@node1534>
Subject: Job 1623611: </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/473730/outputprefix.expclu.gct 8 20 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> in cluster cgalsf Done

Job </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/473730/outputprefix.expclu.gct 8 20 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> was submitted from host <node1556> by user <cgaadm> in cluster <cgalsf>.
Job was executed on host(s) <node1534>, in queue <cga>, as user <cgaadm> in cluster <cgalsf>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/473731> was used as the working directory.
Started at Wed Oct  2 10:57:30 2013
Results reported at Wed Oct  2 10:57:56 2013

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/473730/outputprefix.expclu.gct 8 20 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     28.40 sec.
    Max Memory :         4 MB
    Max Swap   :        36 MB

    Max Processes  :         1
    Max Threads    :         1

The output (if any) follows:



PS:

Read file <.lsf.err> for stderr output of this job.

lsf stderr
